Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., RNA polymerase, sigma 70 subunit, RpoD family from Marinobacter adhaerens HP15

 Score =  200 bits (509), Expect = 7e-56
 Identities = 99/232 (42%), Positives = 153/232 (65%)

Query: 388 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 447
           +K M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWI
Sbjct: 93  RKRMIESNLRLVVKIARRYVNRGLTLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 152

Query: 448 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIR 507
           RQ I R+I +Q RTIR+P+H+++ +N   R +R++ Q++  EP  EE+A  +  P   ++
Sbjct: 153 RQTIERAIMNQTRTIRLPIHVVKELNLYLRAARELTQKLDHEPSAEEIARMVDKPVADVK 212

Query: 508 KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPRE 567
           ++L + +   SM+TPIG   +  L D + D     P D     ++ +     +  L+ ++
Sbjct: 213 RMLGLNERVASMDTPIGAGGEKSLLDTVADEGASDPADLLQDNNMCSCLEKWIDQLSDKQ 272

Query: 568 AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 619
            +VL  RFG+      TLEEVG++  +TRER+RQI+ +ALR+LR     E L
Sbjct: 273 QEVLSRRFGLRGYPVSTLEEVGQEIGLTRERVRQIQVEALRRLREILEKEGL 324



 Score = 30.4 bits (67), Expect = 1e-04
 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 14/119 (11%)

Query: 55  VVETAPDADDLALSDDTTITDEDAAEAAAAALSSVESEIG---------RTTDPVRMYMR 105
           +++   D DD   ++D  + +E   +     ++ VE +I          +  D  ++Y+ 
Sbjct: 9   IIDRVSDMDD---AEDQLLAEEKVEKEPTEEVAEVEEDIPTQGRYFTSQKQLDATQLYLN 65

Query: 106 EMGTVELLTREGEIDIAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLI 164
           E+G   LLT E E+  A+    G    +  + E    +  +++   R     L L DLI
Sbjct: 66  EIGFSPLLTPEEEVYFARLARKGEESGRKRMIE--SNLRLVVKIARRYVNRGLTLLDLI 122