Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., RNA polymerase sigma-70 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  914 bits (2361), Expect = 0.0
 Identities = 474/625 (75%), Positives = 538/625 (86%), Gaps = 9/625 (1%)

Query: 1   MDQNPQSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAP 60
           MD  PQSQLK L+ +GKEQGYLTYAEVNDHLPA++VDS+Q+EDIIQMINDMGI+V E AP
Sbjct: 1   MDHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVFEEAP 60

Query: 61  DADDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 120
           DADD+ +S+D T  DEDAAE AAAAL++VESE+GRTTDPVRMYMREMGTVELLTREGEI 
Sbjct: 61  DADDMMMSEDNT--DEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIV 118

Query: 121 IAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTA 180
           IAKRIE+GIN VQS++AEYP  I  ILEQ+D+ +A+ELRL+D+ISGFV+P D E   PTA
Sbjct: 119 IAKRIEEGINTVQSSVAEYPQAIAMILEQYDQYEADELRLSDIISGFVNP-DEEDLGPTA 177

Query: 181 THIGSELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKF 240
           THIGSELSE DL DEDD   E++DEDED DGDG   D +   G DPE ARE+F++LR  +
Sbjct: 178 THIGSELSEEDLEDEDD---EEDDEDEDGDGDG---DDDGNKGPDPEEARERFSQLRTAY 231

Query: 241 QNLQLAVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVM 300
           ++    ++  GR+  ++ +A   + +IF+EFRL PKQFD LV+++R+ MDRVR QERL+M
Sbjct: 232 ESALKIIDAKGREHPESIQALFEIGEIFKEFRLVPKQFDRLVKSMRSMMDRVRVQERLLM 291

Query: 301 KAVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMIE 360
           K  VE AKMPKK+F+  FTGNE+N +W +    S+KPY   +R  EE+++R   KL  IE
Sbjct: 292 KLCVEQAKMPKKNFVKFFTGNETNLDWFEAEKTSNKPYAEGLRMVEEDVQRCRSKLAAIE 351

Query: 361 QETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG 420
           +ET L +  IKDI+RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
Sbjct: 352 EETGLVIAAIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG 411

Query: 421 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR 480
           NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR
Sbjct: 412 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR 471

Query: 481 QMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTL 540
           QMLQEMGREP PEELAERM MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTL
Sbjct: 472 QMLQEMGREPSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTL 531

Query: 541 ELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIR 600
           ELPLDSAT+ SLK+AT +VLAGLT REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIR
Sbjct: 532 ELPLDSATSESLKSATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIR 591

Query: 601 QIEAKALRKLRHPSRSEVLRSFLDE 625
           QIEAKALRKLRHPSRSE+L+SFLDE
Sbjct: 592 QIEAKALRKLRHPSRSEILKSFLDE 616