Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 614 a.a., RNA polymerase sigma factor RpoD from Klebsiella michiganensis M5al

 Score =  935 bits (2417), Expect = 0.0
 Identities = 483/626 (77%), Positives = 543/626 (86%), Gaps = 13/626 (2%)

Query: 1   MDQNPQSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAP 60
           M+QNPQSQLK LV RGKEQGYLTYAEVNDHLP +IVDS+Q+EDIIQMINDMGI+V+E AP
Sbjct: 1   MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60

Query: 61  DADDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 120
           DADDL L++    TDEDA EAAA  LSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
Sbjct: 61  DADDLLLAETNNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 120

Query: 121 IAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTA 180
           IAKRIEDGINQVQ ++AEYP  I Y+LEQ+DRV+AEE RL+DLI+GFVDPN  E  APTA
Sbjct: 121 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA 180

Query: 181 THIGSELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKF 240
           TH+GSELS+ ++         D+DEDEDE+ D +SSD +    IDPELAREKF ELR ++
Sbjct: 181 THVGSELSQEEM---------DDDEDEDEEEDDDSSDDDNS--IDPELAREKFAELRTQY 229

Query: 241 QNLQLAVNEFGRDSHQASEASDLVL-DIFREFRLTPKQFDHLVETLRTSMDRVRTQERLV 299
           +  +  +   GR SH A++   L L ++F++FRL PKQFD+LV ++R  MDRVRTQER++
Sbjct: 230 ELTRDTIKAKGR-SHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERII 288

Query: 300 MKAVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMI 359
           MK  VE  KMPKK+FI LFTGNE++E W +  +A +KP+  K+ + +E+++R + KLQ I
Sbjct: 289 MKLCVEQCKMPKKNFITLFTGNETSETWFNAAIAMNKPWSEKLLDVKEDVQRGLMKLQQI 348

Query: 360 EQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 419
           EQET L++E++KDI+RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 349 EQETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 408

Query: 420 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 479
           GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
Sbjct: 409 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 468

Query: 480 RQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 539
           RQMLQEMGREP PEELAERM MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED T
Sbjct: 469 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNT 528

Query: 540 LELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 599
           LELPLDSAT  SL+AAT DVLAGLT REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI
Sbjct: 529 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 588

Query: 600 RQIEAKALRKLRHPSRSEVLRSFLDE 625
           RQIEAKALRKLRHPSRSEVLRSFLD+
Sbjct: 589 RQIEAKALRKLRHPSRSEVLRSFLDD 614