Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Klebsiella michiganensis M5al

 Score =  205 bits (521), Expect = 3e-57
 Identities = 112/299 (37%), Positives = 182/299 (60%), Gaps = 11/299 (3%)

Query: 329 DKVLASDKPYVAKVREQEEEIRRSIQK--------LQMIEQETSLSVERIKDISRRMSIG 380
           +K L  ++P  + + E+E   + + Q+        L  I     L+ E     +RR   G
Sbjct: 27  EKALVEEEPSDSDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG 86

Query: 381 EAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 440
           +  +RR    M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FS
Sbjct: 87  DVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143

Query: 441 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQ 500
           TYATWWIRQ I R+I +Q RTIR+P+H+++ +N   R +R++  ++  EP  EE+AE++ 
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLD 203

Query: 501 MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVL 560
            P D + ++L++ +   S++TP+G D +  L D + D     P D+     +K +     
Sbjct: 204 KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKDNGPEDTTQDDDMKQSIVKWQ 263

Query: 561 AGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 619
             L  ++ +VL  RFG+      TLE+VG++  +TRER+RQI+ + LR+LR   +S+ L
Sbjct: 264 FELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQSQGL 322



 Score = 29.3 bits (64), Expect = 3e-04
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 61  DADDLALSDDTTITDEDAAEAAAAALSSV-ESEIGRTTDPVRMYMREMGTVELLTREGEI 119
           D + + + D+  + +E+ +++  A    + +    R  D  ++Y+ E+G   LLT E E+
Sbjct: 18  DENGVEVFDEKALVEEEPSDSDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEV 77

Query: 120 DIAKR 124
             A+R
Sbjct: 78  YFARR 82