Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Enterobacter sp. TBS_079

 Score =  205 bits (522), Expect = 2e-57
 Identities = 112/295 (37%), Positives = 180/295 (61%), Gaps = 11/295 (3%)

Query: 325 EEWLDKVLASDKPYVAKVREQEEEIRRSIQK--------LQMIEQETSLSVERIKDISRR 376
           E + +K L  ++P    + E+E   + + Q+        L  I     L+ E     +RR
Sbjct: 23  EAFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARR 82

Query: 377 MSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG 436
              G+  +RR    M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG
Sbjct: 83  ALRGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139

Query: 437 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELA 496
           ++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N   R +R++  ++  EP  EE+A
Sbjct: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199

Query: 497 ERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAAT 556
           E++  P D + ++L++ +   S++TP+G D +  L D + D     P D+     +K + 
Sbjct: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKDNGPEDTTQDDDMKQSI 259

Query: 557 RDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611
              L  L  ++ +VL  RFG+      TLE+VG++  +TRER+RQI+ + LR+LR
Sbjct: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314



 Score = 28.9 bits (63), Expect = 4e-04
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 63  DDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 122
           D+ AL ++   +D D AE    +  + +    R  D  ++Y+ E+G   LLT E E+  A
Sbjct: 26  DEKALVEEEP-SDNDLAEEELLSQGATQ----RVLDATQLYLGEIGYSPLLTAEEEVYFA 80

Query: 123 KR 124
           +R
Sbjct: 81  RR 82