Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 590 a.a., RNA polymerase sigma-70 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  471 bits (1213), Expect = e-137
 Identities = 277/623 (44%), Positives = 378/623 (60%), Gaps = 48/623 (7%)

Query: 8   QLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDLAL 67
           Q+K L+ +GK  G+LT+ EVN  LPAE+   EQ+E+II + + + I +V++  D   +++
Sbjct: 9   QIKSLIAKGKVSGFLTFDEVNKALPAEVNTPEQIEEIIGIFDQLDIAIVDSEKDGKKISM 68

Query: 68  SDDTTITDEDAAEAAAAALSSVESEI---GRTTDPVRMYMREMGTVELLTREGEIDIAKR 124
           S   +  +E+A       LS  E  +    R+TDPVRMY+REMG+V LL R+GE+ IAK+
Sbjct: 69  SPGES--EEEAPSEGGLDLSDDEETVDYSSRSTDPVRMYLREMGSVPLLDRDGEVVIAKK 126

Query: 125 IEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTATHIG 184
           IE G   V  A+ E P  +  ++   + ++   ++L D++                    
Sbjct: 127 IEMGEQDVLYALVEVPVAVEELVNVGEDLKQNRIKLKDVVK------------------- 167

Query: 185 SELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKFQNLQ 244
                          +E++D  EDE       +  + V +  E  R  F + R  +  L 
Sbjct: 168 --------------TIEEDDPSEDE------MNQRQRVILLLEEIRTTFKKKRKVYSKLD 207

Query: 245 LAVNEFGRDSHQASEASDLVLDI---FREFRLTPKQFDHLVETLRTSMDRVRTQERLVMK 301
                  R +    E  +   DI    R+ +L     D ++ET+   + ++   +R +  
Sbjct: 208 ECCTLERRVASVQREIMNYKEDIVSRLRDIKLEKTLIDRIIETVEDYVRQMHNCQRDLSA 267

Query: 302 AVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMIEQ 361
            ++   K  +    ALF+G E+ E       A+    V ++   +E I   I+ L  ++ 
Sbjct: 268 YILSTGKT-QAEIQALFSGLEAREVSPVAASAALNMTVEELFSFKEMILGKIEILSRLQD 326

Query: 362 ETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN 421
           +   +V  ++++  R+  G + A RAK+E++ +NLRLV+SIAKKYTNRGLQFLDLIQEGN
Sbjct: 327 KCCHNVNDLEEVLWRIKRGNSIAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGN 386

Query: 422 IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ 481
           IGLMKAVDKFEY+RGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL R SR 
Sbjct: 387 IGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRY 446

Query: 482 MLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLE 541
           ++QE+GR+P PEE+AERM  P DK++KVLKIAKEPIS+ETPIGD+EDS LGDFIED    
Sbjct: 447 LVQELGRDPTPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAV 506

Query: 542 LPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQ 601
            P +    T L      VLA LTPRE +VLR RFGI   +DHTLEEVGK F+VTRERIRQ
Sbjct: 507 APAEEVVNTKLGEQIASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQ 566

Query: 602 IEAKALRKLRHPSRSEVLRSFLD 624
           IEAKALRKLRHP RS+ LRS+ +
Sbjct: 567 IEAKALRKLRHPVRSQTLRSYYE 589