Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., sigma 70 family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  121 bits (304), Expect = 4e-32
 Identities = 86/268 (32%), Positives = 147/268 (54%), Gaps = 21/268 (7%)

Query: 356 LQMIEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ-FL 414
           L+ I +   L  E   ++++R  + E     A   +V ++LRLV+ IA  +  R +Q  L
Sbjct: 81  LREISRFPMLKPEEEYELAKR--VRETGDGDAAFRLVSSHLRLVVKIAMDFQRRWMQNVL 138

Query: 415 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE--TI 472
           DLIQEGN+GLM+AV+KF+  +G KFS YA +WI+  I + I D  R ++I     +    
Sbjct: 139 DLIQEGNVGLMRAVNKFDPEKGIKFSYYAAFWIKAYILKFIMDNWRMVKIGTTQAQRKLF 198

Query: 473 NKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKV-LKIAKEPISMETPIGDDEDS-- 529
             LN+  RQ L   G +P    L+ER+ + ++++ ++  ++    +S++ P+GD+     
Sbjct: 199 YNLNK-ERQKLILQGYDPDAATLSERLNVTKEQVVEMEQRLDASDVSLDIPVGDEGGGAS 257

Query: 530 ------HLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDH 583
                  LG  IED      + S     L++    ++  L+ +E  +L+ R  +      
Sbjct: 258 RMDFLPALGPGIEDALSNHEIASMVQNRLQS----IIPKLSDKEVDILQNR--LLSEEPV 311

Query: 584 TLEEVGKQFDVTRERIRQIEAKALRKLR 611
           TL E+G+++D+TRER+RQIEA+ L+K+R
Sbjct: 312 TLREIGEKYDITRERVRQIEARLLQKIR 339



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 4/96 (4%)

Query: 34  EIVDSEQVE--DIIQMINDMGIKVVETAPDADDLALSDDTTITDEDAAEAAAAALSSVES 91
           +I D + V   D +++I+       +T    D +   D   I D+D A       +    
Sbjct: 11  DIADEKHVTVVDDVEIIDGPDDSADDTEDTEDFVDEDDVIDIGDDDHAPDTFHLNAPATV 70

Query: 92  EIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIED 127
             G+  D + +Y+RE+    +L  E E ++AKR+ +
Sbjct: 71  STGK--DSLHLYLREISRFPMLKPEEEYELAKRVRE 104