Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 652 a.a., RNA polymerase sigma factor rpoD from Caulobacter crescentus NA1000

 Score =  520 bits (1340), Expect = e-152
 Identities = 307/634 (48%), Positives = 400/634 (63%), Gaps = 29/634 (4%)

Query: 9   LKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDLALS 68
           +K+ + + K +GY+T  E+N  LP+E V  + +ED + M+++MG+ VVE   DA++ A  
Sbjct: 29  VKKFIKQAKARGYVTMDELNKVLPSEEVSPDAIEDTLAMLSEMGVNVVEAEEDAEN-AEG 87

Query: 69  DDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 128
            +    DE+    A    S   +   RT DPVRMY+REMG+VELL+REGEI IAKRIE G
Sbjct: 88  GEVATRDENTTVIA----SDKPAAYDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAG 143

Query: 129 INQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLI---------SGFVDPNDMETEAPT 179
            + +   + E   T   I+   + +    + L ++I         +G       E +   
Sbjct: 144 RDTMIRGLCESALTFEAIMVWREELGTGRILLREVIDLEGTYAAINGVAAQPAAEDDEGP 203

Query: 180 ATHIGSELSEADLADEDDAVVEDEDEDEDEDGDG------ESSDSEEEVGIDPELARE-- 231
           A  +  E  EA          E EDED+ +DG G      E    E  + I   +A E  
Sbjct: 204 AEPVDDEAGEAKAEG-----AEGEDEDDFDDGAGPTVSAMEGELREGVMAILDAIASEFE 258

Query: 232 KFNELRGKFQNLQLAVNEFGRDSHQASEA-SDLVLDIFREFRLTPKQFDHLVETLRTSMD 290
            F +L+ K    +L   +      +A E  S  ++   +  +L   + + LVE L     
Sbjct: 259 AFRKLQDKLVGSRLKGEDLSDADRKAYEGLSATIIQHLKTLKLNNNRIEALVEQLYAINK 318

Query: 291 RVRTQERLVMKAVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIR 350
           R+   E  +++ + +   + +  F+  + G+E N  W ++V A    +   V    + + 
Sbjct: 319 RLIGLEGRLLR-LADSYGISRGEFLKAYFGSELNPTWSEQVKAMGVRWTKFVENDSQSVT 377

Query: 351 RSIQKLQMIEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRG 410
               ++  +  ET + ++  + I + +  GE +AR+AKKEMVEANLRLVISIAKKYTNRG
Sbjct: 378 DIRSEIAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRG 437

Query: 411 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 470
           LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE
Sbjct: 438 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 497

Query: 471 TINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSH 530
           TINK+ R SRQML E+GREP PEELAE++ MP +K+RKVLKIAKEPIS+ETPIGD+EDSH
Sbjct: 498 TINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSH 557

Query: 531 LGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGK 590
           LGDFIED    LP+D+A  ++L+  T  VLA LTPRE +VLRMRFGI MNTDHTLEEVG+
Sbjct: 558 LGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQ 617

Query: 591 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 624
           QF VTRERIRQIEAKALRKL+HPSRS  LRSFLD
Sbjct: 618 QFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 651