Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RNA polymerase sigma factor RpoS from Burkholderia phytofirmans PsJN

 Score =  182 bits (461), Expect = 3e-50
 Identities = 103/264 (39%), Positives = 157/264 (59%), Gaps = 11/264 (4%)

Query: 356 LQMIEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 415
           L  I  +  L+VE  +  SR    GE +AR+    M+E NLRLV+SIAK Y NRG+  LD
Sbjct: 86  LNRISVKPLLTVEEEQKYSRLAKAGEFEARQV---MIERNLRLVVSIAKGYLNRGVPLLD 142

Query: 416 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 475
           LI+EGN+GLM A++KF+  RG++FSTYATWWIRQ+I R+I +QART+R+PVH+I  +N++
Sbjct: 143 LIEEGNLGLMHAIEKFDPTRGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQV 202

Query: 476 NRISRQMLQEM--------GREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDE 527
            R  R + +           R+   +++A       D++  +L + +   S++ P+  D 
Sbjct: 203 LRAKRHLEKNSMNSGEAAERRDASIDDIAYLTGKTTDEVTDILALNEHTASLDAPLDLDP 262

Query: 528 DSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEE 587
            S L D + D   + P        L+  TR  LA L+ +   V+  RFG++     TLEE
Sbjct: 263 ASSLLDLLSDDQSQSPDAEVQHRELETLTRAWLARLSDKHRHVIERRFGLNHIEPATLEE 322

Query: 588 VGKQFDVTRERIRQIEAKALRKLR 611
           +  +  +TRER+RQI+ +AL +L+
Sbjct: 323 LADEMGLTRERVRQIQQEALVRLK 346