Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., RNA polymerase, sigma 38 subunit, RpoS (RefSeq) from Shewanella sp. ANA-3

 Score =  199 bits (505), Expect = 2e-55
 Identities = 105/273 (38%), Positives = 172/273 (63%), Gaps = 7/273 (2%)

Query: 343 REQEEEIRRSIQKLQMIEQETS----LSVERIKDISRRMSIGEAKARRAKKEMVEANLRL 398
           ++ ++++++++   Q+   E      LS E     SR+   G  K+R     M+E+NLRL
Sbjct: 41  QQVQDDLQKNLDATQLYLGEIGFSPLLSAEEEVYFSRKALKGCEKSRN---RMIESNLRL 97

Query: 399 VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 458
           V+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I R+I +Q
Sbjct: 98  VVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQ 157

Query: 459 ARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPIS 518
            RTIR+P+H+++ +N   R +R++ Q++  EP  EE+AE++Q+    + ++LK+ ++  S
Sbjct: 158 TRTIRLPIHVVKELNVYLRTARELAQKLDHEPTAEEIAEKLQVSSVDVSRMLKLNEKITS 217

Query: 519 METPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGID 578
           ++ P+G D D  L D + D     P        +  +    L  L  ++ +VL  RFG+ 
Sbjct: 218 VDIPLGGDNDKALLDVLADDDNVGPDYKVQDEDISNSVVKWLNELNTKQREVLARRFGLL 277

Query: 579 MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611
                TLE+VG +  +TRER+RQI+ +AL++LR
Sbjct: 278 GYEPSTLEDVGAEIGLTRERVRQIQVEALKRLR 310



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 68  SDDTTITDEDAAEAAAAALSS------VESEIGRTTDPVRMYMREMGTVELLTREGEIDI 121
           S DT   D D  + AA  +        V+ ++ +  D  ++Y+ E+G   LL+ E E+  
Sbjct: 16  SVDTAEFDLDKEDIAADLVQELGLEQQVQDDLQKNLDATQLYLGEIGFSPLLSAEEEVYF 75

Query: 122 AKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLI 164
           +++   G  + ++ + E    +  +++   R     L L DLI
Sbjct: 76  SRKALKGCEKSRNRMIE--SNLRLVVKIARRYNNRGLALLDLI 116