Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., Integrase from Pseudomonas fluorescens FW300-N2E2

 Score =  138 bits (348), Expect = 3e-37
 Identities = 118/417 (28%), Positives = 189/417 (45%), Gaps = 31/417 (7%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           LT   V++   S      +DG GL L++   G   WI +Y   +  K  ++  G   +VS
Sbjct: 4   LTTKAVEKIVRSGSPGMTNDGGGLYLKLGRTGGASWIFRYK--LAGKSRDMGLGKHSEVS 61

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELE-------------NTFGKYSDRW 114
           LA AR++ +EA+ L    +DP   +DE++ + R E E              TF + +  +
Sbjct: 62  LAVAREKAAEARKLSKSGVDPLTSRDEEMERHRLEKEAERLAQDAAKAKATTFKEVALDY 121

Query: 115 LTLKRESVK-PETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKR 173
           +   R   K  + A +    L  +    +G++P Q+I    VL IL+P+      ET  R
Sbjct: 122 IAAHRTGWKNAKHAQQWENTLATYAFKVIGDLPTQEIGIEHVLKILKPIWTV-IPETASR 180

Query: 174 LCRIINEVMRLAVA----SGDIEVNYLADITKLFPAPKR----QHMVTIEPERLPELMQA 225
           L   I  V+  A A     G+    +   + KL P   +    +H   +    LP  M  
Sbjct: 181 LRNRIELVLDAAKARGLRDGENPARWRGHLDKLLPPRAKVRAVKHHAAMSWTELPAFMAP 240

Query: 226 IANANITLATRCLLEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLT 285
           +  A   L+++ L  + + T  R  E   + W +ID   KVW IPA RMK  + H +PL+
Sbjct: 241 LEKAE-DLSSKAL-RFTILTACRTSEVLESTWAEIDVAAKVWTIPALRMKAGKEHRVPLS 298

Query: 286 EQTLALLEIMKPISSHREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALAST 345
           +  L LL  +  I  +      + K  K  +++ +  M L+RM  +  L +HG R+    
Sbjct: 299 KAALDLLAGLPRIKGNNHLFAGARK--KRPLSNMAMLMTLRRM-KRDDLTTHGFRSTFRD 355

Query: 346 TLNEQGFNP-DIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSASNCNT 401
             +E    P ++ E ALAH  +N V  AY R +  E+RR LM  W+ + T  +  NT
Sbjct: 356 WASEVTHYPREVCEQALAHTVENAVEAAYRRGDLFEKRRILMEDWARYATGHAAANT 412