Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., Integrase from Pseudomonas fluorescens FW300-N2E2

 Score =  221 bits (562), Expect = 4e-62
 Identities = 139/410 (33%), Positives = 215/410 (52%), Gaps = 19/410 (4%)

Query: 1   MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISF 60
           MA+ V PLT+ + + AK   K+YTL DG GL L V+  GTK+W  KY  P + K    +F
Sbjct: 1   MARTVTPLTDPKCEAAKPRAKDYTLFDGQGLFLLVRATGTKVWRFKYKKP-SGKPGLATF 59

Query: 61  GCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRE 120
           G +P + L  AR RR++A  LLA   DP +   +  ++   E  NTF   +  W      
Sbjct: 60  GNYPALGLKAARARRADALELLAHGQDPIESAKQAKIEAANEAGNTFEALALEWHASMAG 119

Query: 121 SVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINE 180
               + A +  + +E  + P LG  P+ D+K R +L+ L+ V+ +G L+ V RL + I  
Sbjct: 120 KWSKDHAVRVLKEIEVDLFPMLGKRPVSDLKTRDLLACLKTVEKRGALDVVGRLRQRIAG 179

Query: 181 VMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCL-L 239
           +MR+AV    I  N   D+       K +H   +  ERLPEL+Q    A+      CL +
Sbjct: 180 IMRIAVQRNFIVYNPALDLVGGTATRKTKHRPALPLERLPELLQR-CEADTGRPLTCLAV 238

Query: 240 EWQLHTMTRPIESATARWQDIDFKNKVWVIPAER------------MKMKRPHTIPLTEQ 287
              L    R  E   ARW + DF   +W IP ER             KM  PH +PL+ Q
Sbjct: 239 SLALLVFIRSSELRFARWSEFDFTRSMWTIPGERAPIEGVKRSHRGAKMGTPHLVPLSRQ 298

Query: 288 TLALLEIMKPISSHREYIFPSNKNPKSHVNSQSANMALKRMGY--KGQLVSHGLRALAST 345
           TL +LE ++ +S   + + P +      ++  + N +L+RMGY  K ++  HG R +A +
Sbjct: 299 TLEVLEQIRRLSGRFDLVLPGDHYYWRPMSENTVNKSLRRMGYDTKIEVCGHGFRTMACS 358

Query: 346 TLNEQG-FNPDIIEAALAHVDKNEVRKAY-NRAEYLEQRRKLMSWWSSHI 393
            L E G ++ D +E  ++H ++N VR AY ++AE+LE+RR +M+WW+ ++
Sbjct: 359 ALVESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMMTWWADYL 408