Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., integrase, putative from Pseudomonas fluorescens FW300-N2E2

 Score =  138 bits (348), Expect = 3e-37
 Identities = 116/410 (28%), Positives = 193/410 (47%), Gaps = 37/410 (9%)

Query: 8   LTNTQVKQAKESDKEYTLSDGD--GLQLRVKTNG------TKLWILKYTHPITKKRNNIS 59
           L++  ++   E  K    +DG+  GL L V+ +       +K+W LKY   +  K N  S
Sbjct: 13  LSDALIRSLTEPGKH---ADGEVPGLYLEVRASSKVGKSPSKVWRLKYR--LHGKENRFS 67

Query: 60  FGCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKR 119
            G +PD+ L EAR     A+  +A +  P + K  ++  +    E TF   +++WL  K 
Sbjct: 68  IGAYPDIGLKEARDIARGARRDVANHTAPLKAKTAKIEAQLLNEERTFAYVAEQWLAFKS 127

Query: 120 ESVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIIN 179
             +  ++      AL  HILP +G  PI +IK   + +I+  ++ Q T+   +R+  II 
Sbjct: 128 AELVTKSISGFTGALNNHILPAIGKKPISEIKLEHITTIITELRRQRTMAMARRVRTIIR 187

Query: 180 EVMRLAVASGDIEVNY-LADITKLFPAPKRQHMVTIEP--ERLPEL------MQAIANAN 230
            V+  A   G +E N  L++I +L    K +H+VT  P  ER  +L      +    + +
Sbjct: 188 AVLGFAEGRGWVERNVALSNIEEL----KIRHIVTSNPAIERPSDLGRFLLRLDDCNDGS 243

Query: 231 ITLATRCLLEWQLHTMTRPIESATARWQDIDFKNKVW--VIPAERMKMKRPHTIPLTEQT 288
           +  A R L+   +    RP E    RW+D+D     W  V+   +   K  H +PL EQ 
Sbjct: 244 VATAMRLLVMLPV----RPGELVQMRWEDVDLVGADWRYVVSKTKHLDKSKHIVPLPEQA 299

Query: 289 LALL-EIMKPISSHRE---YIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALAS 344
           L LL E+ K      E   ++F S   P   +N  S   + +R+  +  + +HG RA   
Sbjct: 300 LVLLRELHKTRVVDEEGKGWVFVSPVYPGRPINPTSMLKSFQRIWPEYDITAHGFRATYR 359

Query: 345 TTLNEQ-GFNPDIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHI 393
           T  +E  G +P ++E +L+H     +   Y RA+ L QRR+    W+ ++
Sbjct: 360 TIAHEHLGIDPIVLELSLSHRMPGALGAVYARAQLLVQRREAAQQWADYL 409