Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., Integrase from Pseudomonas stutzeri RCH2

 Score =  233 bits (593), Expect = 1e-65
 Identities = 130/392 (33%), Positives = 209/392 (53%), Gaps = 10/392 (2%)

Query: 6   VPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPD 65
           +PLT  QVK A     +Y L+DG GL L ++  G K W  ++   +  K+++IS G    
Sbjct: 1   MPLTALQVKSAAPRKSDYGLADGGGLFLWIRAAGGKSWRFRFR--LDGKQSHISLGTIDK 58

Query: 66  VSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPE 125
           V+LA+AR+  S+A+ L+A    P   +     +      NTF   +  W   K       
Sbjct: 59  VTLAQARQLASDARQLVAQGRHPGLERKVMRAQAAMSRANTFKSLALEWHQHKAPRWSVG 118

Query: 126 TADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLA 185
            A     A E  + P++G++P+ DIKP   L +   ++++G LE ++++ +   EV R A
Sbjct: 119 YAGDVVEAFELDVFPQVGSLPLTDIKPMQWLQVFRRIESRGALEKLRKVRQRCQEVYRFA 178

Query: 186 VASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAI----ANANITLATRCLLEW 241
           +A+G  E N +ADI      P  +H   +    +P L+++I     +  + +ATR L+  
Sbjct: 179 IATGRAEYNPIADIGGALQTPTSRHYPFLPIAEIPALIRSIQACPGHDVVKIATRLLIL- 237

Query: 242 QLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSH 301
              T  R  E     W + D    +W+IPA RMKM+R H +PL++Q +A+L  ++ I+  
Sbjct: 238 ---TGVRTAELRGVPWSEFDLDKALWLIPAARMKMRRAHLVPLSQQAVAVLRELERITGG 294

Query: 302 REYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAAL 361
               FP   +P   ++  + N  LKR GY G+   HG R   STTL+EQG+  + +E  L
Sbjct: 295 YTLAFPGRNDPAKPMSEAAINQLLKRSGYDGRATGHGFRHTMSTTLHEQGYPSEWVETQL 354

Query: 362 AHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHI 393
           AHVDKN +R  YN A+YLE RR+++ W+++H+
Sbjct: 355 AHVDKNSIRGTYNHAQYLEGRREMLQWYANHV 386