Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., Integrase from Xanthomonas campestris pv. campestris strain 8004

 Score =  185 bits (469), Expect = 4e-51
 Identities = 120/409 (29%), Positives = 200/409 (48%), Gaps = 28/409 (6%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           LT+  V+QAK SDK YTL+D DGL L V   G K W  +YT     +R  IS G +P++S
Sbjct: 2   LTDMVVRQAKASDKPYTLADFDGLFLYVSPVGGKAWHFRYTW--VGQRARISLGSYPELS 59

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLT---LKRESVKP 124
           L +AR+ R +A+ L+A  I+P+  + ++    R   ENTF    ++W+    L  E  + 
Sbjct: 60  LRDAREFRDQARALVAKGINPRTDRKQKRQAIRLAGENTFMAVYEKWMEHRQLTLEEGRQ 119

Query: 125 ETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRL 184
            + ++  R  +K + P L    I +I    +L ++  ++ + +L   +++   + ++   
Sbjct: 120 SSLEQIRRVFKKDVFPYLKRYTIYEITRPVLLEVIGRIEKRESLSVAEKVRTWLKQLADY 179

Query: 185 A--VASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQ 242
           A  V  G +E   +       P P  +H   +    LP  +Q +        T+  +   
Sbjct: 180 AMVVIPGMVEHPAIDLHVVAVPLPPVEHNPFLRMPELPLFLQTLRKYRGMQMTQLAIRLL 239

Query: 243 LHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKR--------------PHTIPLTEQT 288
           L T  R  E   A     D +  +W+IP   +K ++              P+ +PL  Q 
Sbjct: 240 LLTGVRTGELRLATPDQFDLEQGLWIIPVMSLKQRKMLTKKKRKRVTDIPPYIVPLPVQA 299

Query: 289 LAL----LEIMKPISSHREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALAS 344
           + +    L++ KP  +   Y+FP  K   + ++  + N A+KR+GY G+L  HG+RA  S
Sbjct: 300 IEIVRHMLDLFKPAQT---YLFPGVKRITARMSENTVNRAIKRLGYDGRLTGHGIRATIS 356

Query: 345 TTLNEQGFNPDIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHI 393
           T LNE G+    ++A L+H D N +   YN AEY+EQRR +M  W+  +
Sbjct: 357 TALNELGYPKVWVDAQLSHADPNRISATYNHAEYVEQRRLMMQDWADRL 405