Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score =  164 bits (414), Expect = 6e-45
 Identities = 111/397 (27%), Positives = 191/397 (48%), Gaps = 19/397 (4%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFP--D 65
           LT+T+++  K  DK Y ++D DGL + V  +G+  +  +Y + I  ++  I+FG +    
Sbjct: 2   LTDTKLRNLKPRDKLYKVNDRDGLYVAVTVSGSISF--RYNYAIHGRQETITFGRYGVGG 59

Query: 66  VSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPE 125
           ++LAEAR+R  EAK ++A    P + K     K R +   TFG ++++WL  +   +   
Sbjct: 60  ITLAEARERLGEAKKMIAAGKSPAKEKARD--KARVKDAETFGAWAEKWL--RGYQMAES 115

Query: 126 TADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLA 185
           T D       + +  K GN  + +I    + ++ + +  +G   T   +  ++ +V R A
Sbjct: 116 TRDMRRSIYFRELKSKFGNQKLVEITHEDLRALTDAIVERGAPATAVHVREVVFQVYRWA 175

Query: 186 VASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHT 245
           +  G    N    +     A        + P+ +  + Q +       + R   +  L T
Sbjct: 176 IERGQKVENPAELVRPTTIARFEPRDRALTPDEIGLMYQYVERVGTAPSFRAAAKLLLLT 235

Query: 246 MTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREYI 305
           M R  E   A W +++F   +W IP ERMK + PH + L+ Q L +   +K  +   +Y+
Sbjct: 236 MVRKSELTKATWSEVNFSEALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFAGGSDYV 295

Query: 306 FPSNKNPKSHVNSQSANMALKRMGYK---------GQLVSHGLRALASTTLNEQGFNPDI 356
            PS  +  + ++S + N  L  + YK          +   H LR  AST L+E G+N D 
Sbjct: 296 LPSRYDSDAPMSSATLNQVL-TLTYKLAQKEGKPLAKFGPHDLRRTASTLLHEAGYNTDW 354

Query: 357 IEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHI 393
           IE  LAH ++  VR  YN+AEY +QR ++M  W+  I
Sbjct: 355 IEKCLAH-EQRGVRAVYNKAEYRDQRVEMMQDWADMI 390