Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., integrase arm-type DNA-binding domain-containing protein from Rhodanobacter denitrificans MT42

 Score =  160 bits (406), Expect = 5e-44
 Identities = 127/411 (30%), Positives = 202/411 (49%), Gaps = 33/411 (8%)

Query: 1   MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISF 60
           MA+++  LT   +K AK         DG  L L VK +G K W  +Y  P+T K  +   
Sbjct: 1   MAQKINRLTALAIKNAKPGRH----GDGGNLYLLVKDDGRKTWTFRYRAPLTGKVRDKGM 56

Query: 61  GCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELEN----TFGKYSDRWLT 116
           G   DVSL EAR+R +E + +L   IDP    +E  +K++A  E+    TFG+ S+ ++ 
Sbjct: 57  GPAWDVSLPEARERAAEFRRMLRDGIDPIDSANE--IKQKARTEHAKRMTFGRCSELYIE 114

Query: 117 LKRESVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCR 176
             R   +     + + +  +     L  + +  +    V+  L+P+    T ET  RL  
Sbjct: 115 AHRSGWRNAKHAEQWDSTLRTYCAPLWPLDVAAVDTALVMKCLDPIWTTKT-ETASRLRG 173

Query: 177 IINEVMRLAVA----SGDIEVNYLADITKLFP----APKRQHMVTIEPERLPELMQAIAN 228
            I  V+  A      SGD    +   + +L P      K +H   +    + E M  +  
Sbjct: 174 RIESVLAWATVRKYRSGDNPAAWRNHLDQLLPKRSKVQKVEHRPALPYVGIAEFMAQLRQ 233

Query: 229 ANITLATRCLLEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQT 288
               LA R +LE Q+ T TRP E++ ARW++ID  + +W+IP ERMK  + H +PL++  
Sbjct: 234 RQ-GLAAR-VLELQILTATRPGEASGARWEEIDLDSALWIIPEERMKAGKEHRVPLSDAA 291

Query: 289 LALLEIM------KPISSHREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRAL 342
           + LL  M      KP++ H  YIFP N   K    + +A MAL +    G + +HG R+ 
Sbjct: 292 VTLLRSMIPKTKGKPVTPH-GYIFPGN---KGRAITTAAGMALLKEMQPG-ITAHGFRST 346

Query: 343 ASTTLNEQGFNP-DIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSH 392
                 E   +P ++IEAA+AH  K+    AY R + L++R++LM+ W+ +
Sbjct: 347 FRDWAAETTQHPREVIEAAMAHRLKDAAEAAYQRGDLLQRRKRLMADWAGY 397