Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., tyrosine-type recombinase/integrase from Rhodopseudomonas palustris CGA009

 Score =  159 bits (401), Expect = 2e-43
 Identities = 114/396 (28%), Positives = 180/396 (45%), Gaps = 16/396 (4%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCF--PD 65
           LT+  +K  K  +K Y ++D DGL ++V T+GT  + L Y   +  +R  ++ G +    
Sbjct: 2   LTDVALKNLKPREKAYKVTDRDGLYVQVSTSGTLTFRLDYR--LHGRRETLTLGKYGPSG 59

Query: 66  VSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPE 125
           +SLA AR+   +AK  +     P Q K     K R +   +FG++ +RWL   +  +   
Sbjct: 60  LSLARAREATIDAKRAVFEGRSPAQEKQRD--KRRIKEAKSFGEFGERWLV--KAPMADS 115

Query: 126 TADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLA 185
           T        E+ +LP   N  + +I P  + +    +  +G   T   +  I+ ++   A
Sbjct: 116 TRAMRRSIFERELLPVWKNRLLTEITPDDLRAHCGKIVDRGAPATAIHVRDILKQIYGFA 175

Query: 186 VASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHT 245
           +  G+   N   D+     A       ++ P  +  +++ + +       R  +   L T
Sbjct: 176 ILHGEKVANPADDVGPASIATFVPKDRSLSPTEIRVMLKQLDHVATLPTIRLGMRLFLLT 235

Query: 246 MTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREYI 305
           M R  E   A W ++DF+N VW IP ERMK  + H + L++Q L ++  +K  + +  Y+
Sbjct: 236 MVRKSELQDAVWDEVDFENAVWTIPKERMKRSKAHNVYLSQQCLDIMIALKTCAGNSRYL 295

Query: 306 FPSNKN---PKSHVNSQSANMALKRMGYKGQL-----VSHGLRALASTTLNEQGFNPDII 357
            PS  +   P S         A+     K  L       H LR   ST LNE GFN D I
Sbjct: 296 LPSRYDADAPMSRATFNRVTYAVVERAQKEGLPLEPFTVHDLRRTGSTLLNELGFNSDWI 355

Query: 358 EAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHI 393
           E  LAH D    R  YN+AEY  QRR +M  WS  I
Sbjct: 356 EKCLAHEDGRSSRGVYNKAEYEHQRRHMMQEWSDII 391