Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 413 a.a., tyrosine-type recombinase/integrase from Pseudomonas fluorescens SBW25-INTG

 Score =  189 bits (481), Expect = 1e-52
 Identities = 123/394 (31%), Positives = 193/394 (48%), Gaps = 10/394 (2%)

Query: 7   PLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDV 66
           PL +T +   +   KEY   DG+GL  RVK +G K W L+Y  P       +  G +P+V
Sbjct: 10  PLADTTLAGLEPESKEYRELDGNGLYFRVKPDGGKSWQLRYKRPAGNWAW-MGLGGYPEV 68

Query: 67  SLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRES-VKPE 125
           S A AR++ ++ + +++   DP + K        A    TF   ++ WL  K E  +   
Sbjct: 69  SGALAREKAADLRKVVSSGADPLEQKRSAKAAIDAAKARTFRAAAEAWLKAKEEKGLATS 128

Query: 126 TADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLA 185
           T  K    L+K ILP LG+ P+ +I       +   ++A+      ++    IN++   A
Sbjct: 129 TLHKIRTYLDKDILPALGDKPLDEITRTDCADLQASLEARDAHNVAEKCRTWINQIFGRA 188

Query: 186 VASGDIEVN---YLADITKLFPAPK-RQHMVTIEPERLPELMQAIANANITLATRCLLEW 241
           +  G  E +    L DI     APK +QH   +EPE L E +QA+ N    L  R     
Sbjct: 189 IGLGLTENDPGSRLRDIAA--QAPKTQQHPHLLEPE-LAEFLQALKNTPSRLTARTAAWL 245

Query: 242 QLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSH 301
            + T +RP     A W++ D +  +W  PA +MKM+R    PL  Q +  L  +  ++  
Sbjct: 246 CIWTASRPGMVRLAEWKEFDLEKAIWTTPAAKMKMRRDFVCPLPHQAVTALRDLHCLTGR 305

Query: 302 REYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAAL 361
             ++FP        ++  + N     +GYKG+LV HG R  AST L E G+  + +EA L
Sbjct: 306 SRWLFPGVGAKNPTISENTINKVFATIGYKGRLVGHGTRHTASTLLREHGWPKEHVEAQL 365

Query: 362 AHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITS 395
           AH ++  +   YN+A+Y EQR K+M W++ H+ S
Sbjct: 366 AHKEEG-ISGVYNKAQYFEQRVKMMQWYADHLDS 398