Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., phage integrase family protein (RefSeq) from Shewanella loihica PV-4

 Score =  447 bits (1149), Expect = e-130
 Identities = 213/408 (52%), Positives = 289/408 (70%)

Query: 1   MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISF 60
           MA    PLTNTQ+K  K   K+  LSDG GLQLRV+TNG+KLW   Y HP+TKKR NI  
Sbjct: 1   MAVITTPLTNTQIKNQKPGPKDIVLSDGGGLQLRVRTNGSKLWNYNYYHPVTKKRVNIGI 60

Query: 61  GCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRE 120
           G +PD+ LA+AR+   E + L+A  +DPK  ++++ LK + E+  T    +  WL +K+ 
Sbjct: 61  GPYPDIPLAKAREIALEYRQLVACGVDPKSKREQESLKLKQEVLYTLKNVAAEWLEIKKS 120

Query: 121 SVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINE 180
            V    A K + +LE H+ P+LG+ P+  I    V+ +  P++A+G+LET+KRL + +NE
Sbjct: 121 EVTKSHAAKTWSSLESHVFPELGDTPLNKITAPLVIKVFRPIEAKGSLETIKRLSQRLNE 180

Query: 181 VMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLE 240
           +M   V  G I+ N L  I   F  PK++ M T+ P  LP LM+ ++ A+I   TRCL+E
Sbjct: 181 IMNFGVNCGYIDSNPLVGIRAAFKKPKKESMATLTPSELPLLMRHLSQASIKRVTRCLIE 240

Query: 241 WQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISS 300
           WQLHTMTRP E+ATARW ++D  N  W IPAE+MK +R H IPLT+Q L +L+ +KPIS 
Sbjct: 241 WQLHTMTRPSEAATARWDELDLDNLTWTIPAEKMKRRREHVIPLTQQMLGILDAIKPISG 300

Query: 301 HREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAA 360
           HR+YIFP++++PKSH N+Q+AN+ALKRMG KG+LVSHG+RALASTTLNEQGF  D+IEAA
Sbjct: 301 HRDYIFPADRDPKSHCNTQTANVALKRMGLKGKLVSHGMRALASTTLNEQGFESDLIEAA 360

Query: 361 LAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSASNCNTSLAERKV 408
           L+HVD N+VR AYNR+++LE+RR +MSWWS HI  AS  N S++ R+V
Sbjct: 361 LSHVDANQVRAAYNRSDFLERRRPMMSWWSKHIEEASQGNLSVSCRRV 408