Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  474 bits (1219), Expect = e-138
 Identities = 224/404 (55%), Positives = 302/404 (74%)

Query: 1   MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISF 60
           MA+   PL++T++K AK  DKEY L+DG GLQ+R+K NG+KLW+L Y+HPITKKR N+S 
Sbjct: 1   MARLTKPLSDTEIKTAKPKDKEYNLADGGGLQIRIKPNGSKLWLLNYSHPITKKRQNLSL 60

Query: 61  GCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRE 120
           G +PD+SL  ARK   EA+TLLA   DPK H++ Q+  + A +E+TFGK +  W   K++
Sbjct: 61  GTYPDISLLSARKLAQEARTLLAHGTDPKAHREAQIAAKAAIIEHTFGKIAAEWFERKKD 120

Query: 121 SVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINE 180
            V  + A   +R+ + H+LP L ++PI  I    V+  L P++A+G LETVKRL + +NE
Sbjct: 121 EVTEDHAAATWRSFKLHLLPSLKDIPISQITAPMVIEFLRPIEAKGNLETVKRLTQRLNE 180

Query: 181 VMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLE 240
           VM  AV +G I  N L+ I  +F  P+++H+  ++P+ LPELMQAIANA+I   TR L+E
Sbjct: 181 VMIYAVNTGLIHANPLSGIKAIFKKPRKEHLAALKPDELPELMQAIANASIKKVTRFLIE 240

Query: 241 WQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISS 300
           WQLHTMTRP E+A ARW +I+F  ++W+IPA RMKM+R H IPLTEQTLALL  +KPIS 
Sbjct: 241 WQLHTMTRPNEAAAARWDEINFDERIWLIPAARMKMRRDHQIPLTEQTLALLAAIKPISG 300

Query: 301 HREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAA 360
           HREYIFP++++PK+H N Q+AN ALKRMG K +  +HG R+LASTTLNEQGF+PD+IEAA
Sbjct: 301 HREYIFPADRDPKTHSNVQTANAALKRMGLKDRTTAHGFRSLASTTLNEQGFDPDVIEAA 360

Query: 361 LAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSASNCNTSLA 404
           LAH DKN+VR AYNR+ YL++RR++M+WWS++I  A+  N SLA
Sbjct: 361 LAHTDKNQVRSAYNRSIYLDRRREMMTWWSNYIVEAAKGNVSLA 404