Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., putative site specific integrase from Klebsiella michiganensis M5al

 Score =  261 bits (668), Expect = 2e-74
 Identities = 133/388 (34%), Positives = 219/388 (56%), Gaps = 2/388 (0%)

Query: 6   VPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPD 65
           +PL + Q+++AK   K YTL DG GL L ++ NG+K W  +Y +    K   IS G +P 
Sbjct: 1   MPLNDMQIRRAKPEAKAYTLGDGQGLSLLIEPNGSKSWRFRYRY--AGKPKMISLGVYPT 58

Query: 66  VSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPE 125
           ++LA+AR RR +A+ L+A   +P + + EQ +  + E E+ F K +  W  +K       
Sbjct: 59  ITLADARSRRDDARKLVAEGKNPSEVRKEQKIALQTESESAFEKIATEWHQMKSAKWSAG 118

Query: 126 TADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLA 185
            A     A +  I P +G  PI +IKP  +L++L  ++ +G LE ++++ +  +EV R A
Sbjct: 119 YASDIMEAFQNDIFPYVGTRPIGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYA 178

Query: 186 VASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHT 245
           +A+G  E N  AD++      +  H   ++ + LP+ ++A+ +   +   +   +  + T
Sbjct: 179 IATGRAEFNPAADLSSALEVHQSNHFPFLKADELPDFLRALHSYTGSRLVQIATKLLMIT 238

Query: 246 MTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREYI 305
             R IE   A W + D  N +W IPAERMKM+R H +PL+ Q L LL  +K ++ +  Y+
Sbjct: 239 GVRTIELRAALWSEFDLDNAIWEIPAERMKMRRSHLVPLSTQALDLLNELKMMTGNYRYV 298

Query: 306 FPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAALAHVD 365
           FP   +P   ++  S N  +KR+GY G++  HG R   ST L++Q +N   IE  LAH+D
Sbjct: 299 FPGRNDPNKPMSEASINQVIKRIGYGGKVTGHGFRHTMSTILHDQNYNSAWIEIQLAHID 358

Query: 366 KNEVRKAYNRAEYLEQRRKLMSWWSSHI 393
           KN +R  YN A Y+ QR+++M  +++ I
Sbjct: 359 KNYIRGTYNHANYISQRKEMMQVYANMI 386