Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., prophage P4 integrase from Klebsiella michiganensis M5al

 Score =  206 bits (524), Expect = 1e-57
 Identities = 128/390 (32%), Positives = 209/390 (53%), Gaps = 26/390 (6%)

Query: 20  DKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVSLAEARKRRSEAK 79
           +K+  LSDG GL L +K+NG+  W L+Y      +   IS G +  + LA AR++R E K
Sbjct: 26  EKDSRLSDGSGLYLLIKSNGSAYWRLRYR--FNGEDRLISLGEYKYIPLALAREKREEVK 83

Query: 80  TLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETADKAYRALEKHIL 139
             +A  IDP+  KDE+          TF + + +W    R+  K E + +  ++L   + 
Sbjct: 84  RNIARGIDPRGTKDEEGFL-------TFREVAMQWHASNRQWSK-EHSRRILKSLLDEVF 135

Query: 140 PKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVASGDIEVNYLADI 199
           P  G+  I+ +K + +L  ++ V+  G LE   R+ + IN VM LAV +G +E N +A  
Sbjct: 136 PVFGDDNIKLLKTQDLLKPVKQVQDSGRLELASRIYQRINSVMTLAVDNGLLEFNPIAHK 195

Query: 200 TKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHTMTRPIESATARWQD 259
           +        +H   +E E +PE ++ I        T+  + + LHT  R  E   ARW++
Sbjct: 196 SGALIKRNSEHRAALELENIPEFLKRIEKFKGRRLTQLAMTFLLHTFVRSSELRFARWKE 255

Query: 260 IDFKNKVWVIPAER------------MKMKRPHTIPLTEQTLALLEIMKPISSHREYIFP 307
            D +N +W IP+ R             KMK PH +PL+ Q  ++++ +K I+  R ++F 
Sbjct: 256 FDLENSLWTIPSVREEIPGVKYSYRGSKMKTPHIVPLSHQACSIIQEIKSITGERIFVFT 315

Query: 308 SNKNPKSHVNSQSANMALKRMGY--KGQLVSHGLRALASTTLNEQG-FNPDIIEAALAHV 364
           S+  PK  ++  + N AL+ MGY  K  L SHG R +A + L E G ++ D IE  ++H 
Sbjct: 316 SDHFPKKPMSENTINHALQSMGYDTKKDLCSHGFRTMACSALIESGKWSRDAIERQMSHQ 375

Query: 365 DKNEVRKAY-NRAEYLEQRRKLMSWWSSHI 393
           ++N VR AY ++AE + +R+K+M WWS ++
Sbjct: 376 ERNNVRAAYIHKAELIPERQKMMQWWSDYL 405