Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., site-specific recombinase, phage integrase family protein from Klebsiella michiganensis M5al

 Score =  230 bits (586), Expect = 7e-65
 Identities = 139/407 (34%), Positives = 215/407 (52%), Gaps = 29/407 (7%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           L   QV+ AK  DK Y ++DG GL L V   G+K W +KY  P  KK + ++FG +P V+
Sbjct: 3   LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT 62

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELEN----TFGKYSDRW-LTLKRESV 122
           LA+AR +R EAK LL   IDPK  + E      A+ EN    TF   +  W  + KR S 
Sbjct: 63  LAQARAKRDEAKKLLVQGIDPKAEQKE------AQAENSGAYTFETIAREWHASNKRWS- 115

Query: 123 KPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVM 182
             +   +  R LE +I P +G   I+ +K   +L+ ++ V A G  +  +RL + +  +M
Sbjct: 116 -EDHRSRVLRYLELYIFPYIGTSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIM 174

Query: 183 RLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQ 242
           R AV +  I+ N  +D+       K +H   +   R PE +  +A     + TR  +E  
Sbjct: 175 RYAVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELS 234

Query: 243 LHTMTRPIESATARWQDIDFKNKVWVIPAER------------MKMKRPHTIPLTEQTLA 290
           L T  R  E   ARW++ DF   +W +PA+R            MKMK  H +PL+ Q + 
Sbjct: 235 LLTFVRSSELRFARWEEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMI 294

Query: 291 LLEIMKPISSHREYIFPSNKNPKSHVNSQSANMALKRMGY--KGQLVSHGLRALASTTLN 348
           LL  +K IS  +E +FP + +    ++  + N AL+ MGY  K ++  HG R +A   L 
Sbjct: 295 LLAQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALG 354

Query: 349 EQG-FNPDIIEAALAHVDKNEVRKAY-NRAEYLEQRRKLMSWWSSHI 393
           E G ++ D IE  L+H ++N VR AY + +E+L++RR ++ WW+ ++
Sbjct: 355 ESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYL 401