Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  230 bits (586), Expect = 6e-65
 Identities = 132/393 (33%), Positives = 216/393 (54%), Gaps = 10/393 (2%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           LT+ + + AK ++K Y L DG G+ L V  +G K W LKY   +  K   +S G +P+V 
Sbjct: 2   LTDIKARAAKPAEKVYRLYDGGGMYLEVPPSGNKRWRLKYR--VNGKEKRLSLGVYPNVG 59

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETA 127
           L EAR++R E + L+A  IDP   +  Q +   A+   +F   +  W+ L+  +  P   
Sbjct: 60  LKEAREKRDELRRLIAEGIDPAAQRCPQKVAPTAD---SFEMVAREWMDLRSPAWAPRHL 116

Query: 128 DKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVA 187
               + LE +I P +G +PI  I P  VL+ L  V+ +G +E  ++   I ++V R AVA
Sbjct: 117 STTCQRLEAYIFPHIGPLPIDQIGPLDVLNALRIVEKRGAVEAARKTLSICSQVFRYAVA 176

Query: 188 SGDIEVNYLADITKLFPAPKRQHMVTI-EPERLPELMQAIANANITLATRCLLEWQLHTM 246
           S  I+ +   D+       +  H   I +P+ +  LM+AI   +  +  RC L +   T 
Sbjct: 177 SARIQSDPCRDLRGALKTRQPGHYAAIVDPKDVGALMRAIDGYSGAMVVRCALRFLALTF 236

Query: 247 TRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISS--HREY 304
            RP E   A W + D + ++W IPA +MK +R H +PL+ Q LA+L  ++  +   +   
Sbjct: 237 VRPGELRAAEWNEFDMERRIWTIPAHKMKKRREHIVPLSTQALAVLRDVRATAPRLNSPM 296

Query: 305 IFPSNKNPKSHVNSQSANM-ALKRMGY-KGQLVSHGLRALASTTLNEQGFNPDIIEAALA 362
           +F S +       S++  + AL+ +GY +G + +HG RA+AS+ LN  G+NPD+IE  LA
Sbjct: 297 VFQSVRLRSDRGLSENTLLVALRSLGYGQGTMTAHGFRAMASSLLNGLGYNPDVIERQLA 356

Query: 363 HVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITS 395
           H++ N++R AY+R EYLE+R  +M  ++ ++ S
Sbjct: 357 HIEGNKIRAAYHRTEYLEERTAMMQAYADYLDS 389