Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., integrase from Burkholderia phytofirmans PsJN

 Score =  148 bits (373), Expect = 4e-40
 Identities = 110/409 (26%), Positives = 183/409 (44%), Gaps = 33/409 (8%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPD-- 65
           LT+ Q++  K ++K Y ++D  GL   V  +G   +  +Y + +  +R  +  G +    
Sbjct: 2   LTDMQLRALKPAEKIYKVADQQGLYAAVTPSGAVSF--RYDYRVNGRRETLVIGRYDPSL 59

Query: 66  ----------------VSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGK 109
                           +SL+EAR  R  A   +     P + K E+  +    L  TFGK
Sbjct: 60  SSRKPRKLDELGFGMAISLSEARLLRDHAYGAIQRGHSPSRAKVEKRAEAAEAL--TFGK 117

Query: 110 YSDRWLTLKRESVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLE 169
           +++R+      ++   T        E+++  + G + +++I P  +++  E +K +G   
Sbjct: 118 WAERYFA--ETALADSTRSMRKSVYERNLASEFGRLKLEEITPVRLMARCEKIKERGAAA 175

Query: 170 TVKRLCRIINEVMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANA 229
                  I+ +V R   A G    N  A I     A  +     + PE +     A+   
Sbjct: 176 QAVHAREIVLQVFRFVEARGIKVDNPAAAIRPSAIATFKARDRALSPEEIYIFFNALDLT 235

Query: 230 NITLATRCLLEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTL 289
             T   R   ++ L T+ R  E   A W +++F+   W IP ERMK +RPH + L+EQ L
Sbjct: 236 PTTPTLRLATKFMLLTLVRKSEFIDATWDEVNFETATWTIPKERMKARRPHHVYLSEQAL 295

Query: 290 ALLEIMKPISSHREYIFPSNKNPKSHVNSQSANMAL----KRMGYKGQ----LVSHGLRA 341
            +L   K      +Y+ P      S +++ + N  +    K +  +G        H LR 
Sbjct: 296 EILVAFKTCFGSSQYLHPGRYETASPISAATLNRVIDSTVKLICARGDTFEPFTVHDLRR 355

Query: 342 LASTTLNEQGFNPDIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWS 390
            AST L+E GFN D IE  LAH ++  VR  YN+AEY EQRR ++  W+
Sbjct: 356 TASTHLHEAGFNSDWIEKCLAH-EQRGVRAIYNKAEYAEQRRVMLQAWA 403