Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., phage integrase family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  389 bits (1000), Expect = e-113
 Identities = 197/397 (49%), Positives = 261/397 (65%), Gaps = 1/397 (0%)

Query: 1   MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISF 60
           M +    LT   V  AK   K Y LSDG  L L V+T G K W  +Y  P T K      
Sbjct: 1   MGRSTNKLTAKAVLNAKAEAKPYRLSDGGNLYLYVRTAG-KTWEFRYIRPSTSKPTYFGL 59

Query: 61  GCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRE 120
           G +PDVSLAEAR +  EA+  LA  IDP+  K E  LK   E   T    +  W+  K+ 
Sbjct: 60  GSYPDVSLAEARDKALEARKNLAEGIDPQLLKVENKLKAATENAQTLKHIAQMWMDSKQG 119

Query: 121 SVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINE 180
           S+KP+T +  +R LE +  PKLG++ I  +     ++ L+P++ +G LETVKR  +++NE
Sbjct: 120 SIKPKTIEGNWRKLELYAFPKLGSIAISRLTAPIAIAALKPLEQKGHLETVKRTAQLLNE 179

Query: 181 VMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLE 240
           +M  +V SG I  N L+ I ++F   K +H+  ++P  L EL+Q IANAN+ L TRCL+E
Sbjct: 180 IMNFSVNSGYIHANPLSGIREVFRKSKVEHLKALKPAELAELLQTIANANLLLTTRCLIE 239

Query: 241 WQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISS 300
           WQLHTMTRP E+A ARW++IDF  K+W IP  RMKM R H IPLTE TL +LE +KPIS 
Sbjct: 240 WQLHTMTRPNEAAGARWEEIDFDAKLWTIPESRMKMNREHIIPLTEHTLTILETVKPISE 299

Query: 301 HREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAA 360
             +++FPS+K+P+ H + ++ N AL RMG KG+   HGLR+LASTTLNEQGF+ D+IEAA
Sbjct: 300 QSQFVFPSSKDPQKHTDPETINKALGRMGLKGRTTGHGLRSLASTTLNEQGFDGDVIEAA 359

Query: 361 LAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSAS 397
           LAHVDKN++R AYNR  YLE+R KLM WWS+HI +A+
Sbjct: 360 LAHVDKNQIRSAYNRTTYLERRTKLMEWWSNHIATAA 396