Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  321 bits (822), Expect = 7e-92
 Identities = 198/631 (31%), Positives = 341/631 (54%), Gaps = 16/631 (2%)

Query: 5   FVKKLIFISSFILLVTVA-FVVWEGYTTAKKEVSVVIEDGINEIINKTERFVSLKLESDI 63
           F  K++  ++ ++ V  A F+++  Y   ++ ++   E  + E+ + T R +   ++  I
Sbjct: 3   FSHKILLAAALVVAVAFACFILFNDYRQ-RQSLNASTETSMQELGSLTSRNIQTWVDGRI 61

Query: 64  SLASSIVDSISLRISDEQYINDIINGNAIKKAFLSTGFGFDSNGKVIENDPNWEPEDDYD 123
            L  S+   I+   S    +   +   A    F  + FG      V+ + P      DYD
Sbjct: 62  QLLQSLAQQIAADGSSADSLKRAVGLPAYTSNFQLSYFG--GTDGVMFSVPAGNRAADYD 119

Query: 124 PRSRGWYQEAKKNKRIFITEPYLDTEGKNFLVSISSPVADTMNNFIGAMYFDVDLSRIQK 183
           PR+RGWY+ A   ++  +TEPY+       ++++++PV    N  IG    D+DLS +  
Sbjct: 120 PRARGWYKAANSAQQTIVTEPYIAASSGKLVITVATPVQH-QNQMIGVAGADIDLSSVSA 178

Query: 184 NVDDINLFEAGYVFITSNTGKVIIHSNTDELGKNVKDIY-NGF-RLDKGKVVLSVNGVNK 241
            ++ +N    G+ FI S  GK++IH ++  + K + + Y NG  ++  G   + ++G  +
Sbjct: 179 IINSLNFGGHGHAFIVSADGKILIHPDSKRVLKTLAEAYPNGAPQISPGVKEVDLDGKTQ 238

Query: 242 WL---YTSPILGGDWFIIAVIDESIAMQSINKMKYELIFYSAIGLVFGGLILVFILRRLM 298
           ++   + + + G DW++  V+D+  A+  +++ +   +    I +VF   +L  ++R LM
Sbjct: 239 FISFTHVNGVPGADWYVALVLDKDTALAMLSEFRTSALIAMVIAVVFIIALLGMLIRVLM 298

Query: 299 SPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFNSFTEMLGSQIRQLKTIASGV 358
            PL T+  A+ DIA G GDLT++L  +   EF  L   FN F E + + IR++ +    V
Sbjct: 299 QPLLTMGRAMHDIAEGEGDLTRRLVIHGHDEFGALGTSFNRFVERIHTSIREVASATGQV 358

Query: 359 LDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVANSAQVAADAAKEGESAS 418
            + A +  + +  S    +QQ      +A A+N++   A E+A +A +A+  + +  S +
Sbjct: 359 NEVALRVVSASNSSMFNSDQQASRTSSVAAAINQLGAAAQEIAQNAALASQHSSDARSLA 418

Query: 419 LEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLLALNAA 478
            +G  VV +T  A+Q+LS +I  S  +++ L   T  I  +L+VI  I+ QTNLLALNAA
Sbjct: 419 EDGQQVVDKTIAAMQQLSAKISDSCGNIETLNSNTVNIGQILEVITSISQQTNLLALNAA 478

Query: 479 IEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETD 538
           IEAARAGE+GRGFAVVADEVR LA RTQ S  Q+ ++IE+LQ GA+    +M +S+ +++
Sbjct: 479 IEAARAGEAGRGFAVVADEVRNLAHRTQDSAQQVQKMIEELQVGAREAVLTMTDSQRQSE 538

Query: 539 IVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLS---IK 595
             V   NQ  E++  V Q I  I  MN  +A+A EEQ+ V E IN +   I  L+   ++
Sbjct: 539 SSVGIANQAGERLGSVTQRIGEIDGMNQSVATATEEQTAVVESINVDITEINTLNQEGVE 598

Query: 596 LSEAASNAGTEMNAQVSKVKEQNELLNEFKI 626
             +A   A  ++  Q +++K   +L+  F+I
Sbjct: 599 NLQATLRACADLEQQAARLK---QLVGSFRI 626