Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Chemotactic transducer from Pseudomonas fluorescens FW300-N1B4

 Score =  283 bits (725), Expect = 1e-80
 Identities = 187/634 (29%), Positives = 328/634 (51%), Gaps = 17/634 (2%)

Query: 2   NVGFVKKLIFISSFILLVTVA-FVVWEGYTTAKKEVSVVIEDGINEIINKTERFVSLKLE 60
           N+ F  K++  ++ I++   A F ++  Y   +  +   +++ + E+ + T   +   L 
Sbjct: 4   NLRFSHKILLAAALIVIAAFASFTLYNDYLQ-RNAIRNDLDNYLQEMGSVTANNIQTWLA 62

Query: 61  SDISLASSIVDSISLRISDEQYINDIINGNAIKKAFLSTGFGFDSNGKVIENDPNWEPED 120
               L  ++  +++L  +D   ++ ++   A+   F+    G      +I   P+ +  D
Sbjct: 63  GRSLLIENLSQNVALN-ADTDNVSKLLEQKAVTSTFMGAYLGNKDGTFIIR--PDSKMPD 119

Query: 121 DYDPRSRGWYQEAKKNKRIFITEPYLDTEGKNFLVSISSPVADTMNNFIGAMYFDVDLSR 180
            YDPR R WY+ A+      +TEPY+D      ++SI + V     + IG +  D+ L  
Sbjct: 120 GYDPRVRPWYKSAQSTGGSALTEPYIDLASGQLVISIVNSVLKDGQS-IGVVGGDLSLQV 178

Query: 181 IQKNVDDINLFEAGYVFITSNTGKVIIHSNTDELGKNVKDIY--NGFRLDKGKVVLSVNG 238
           I  +++ ++    GY F+ S  GK+++H +     K++ + Y  N  R+      + V+G
Sbjct: 179 IADSLNALDFDGMGYAFLISADGKILVHPDKSLAMKSLSEAYPKNTPRIGSELSEIDVDG 238

Query: 239 VNKWLYTSPILG---GDWFIIAVIDESIAMQSINKMKYELIFYSAIGLVFGGLILVFILR 295
             + +  +PI G    +W+I   +D+  A   +++ +   +  + I +     +L  ++R
Sbjct: 239 KTRIVTFTPIKGLSSVNWYIGLSVDKDKAFSMLSEFRTSAVIATIIAVAIIIALLGMLIR 298

Query: 296 RLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFNSFTEMLGSQIRQLKTIA 355
            L+ PL  +  A++DIA G GDLTK+L      EF  L   FN F E + + IR++ +  
Sbjct: 299 LLIQPLHVMTRAMEDIADGEGDLTKRLTIQNQDEFGILGTAFNRFVERVHTSIREVSSAT 358

Query: 356 SGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVANSAQVAADAAKEGE 415
             V + A +    +  S    +QQ      +A A+N++   A E+A +A  A+  A +  
Sbjct: 359 GQVNEVALRVVAASNSSMFNSDQQASRTSSVAAAINQLGAAAQEIARNAAQASSQASDAR 418

Query: 416 SASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLLAL 475
           S + +G  VV  +  A+ +LS  + +S  +++ L   T  I  +L+VI  I+ QTNLLAL
Sbjct: 419 SLAEDGQQVVDRSIAAMNQLSTMLSASSTNIESLNSKTVNIGQILEVITSISQQTNLLAL 478

Query: 476 NAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKL 535
           NAAIEAARAGE+GRGFAVVADEVR LA RTQ+S  Q+  +IE+LQ GA+    +M +S+ 
Sbjct: 479 NAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAQQVQTMIEELQVGARESVSTMSDSQR 538

Query: 536 ETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLS-- 593
            +   VE  N   E+++ V   I  I  MN  +A+A EEQ+ V E IN +   I  L+  
Sbjct: 539 HSQDSVEIANLAGERLNSVTLRIGEIDGMNQSVATATEEQTAVVESINVDITEINTLNQE 598

Query: 594 -IKLSEAASNAGTEMNAQVSKVKEQNELLNEFKI 626
            ++  ++   A +++  Q S++K   +L+  F+I
Sbjct: 599 GVENLQSTLRACSDLEQQASRLK---QLVGSFRI 629