Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  279 bits (713), Expect = 3e-79
 Identities = 188/636 (29%), Positives = 334/636 (52%), Gaps = 27/636 (4%)

Query: 5   FVKKLIFISSFILLVTVA-FVVWEGYTTAKKEVSVVIEDGINEIINKTERFVSLKLESDI 63
           F  K++  +S I++ T + F ++  Y          I D +N  +++     +  +++ +
Sbjct: 7   FSHKILLAASLIVIATFSLFTLFNDYLQRN-----AIRDNLNSYLDEMGDVTAHNIQNWL 61

Query: 64  SLASSIVDSISLRISD---EQYINDIINGNAIKKAFLSTGFGFDSNGKVIENDPNWEPED 120
           S    +V+S +  I     E  + +++   A+   F+ +  G      ++   P  E   
Sbjct: 62  SGRILLVESAAQSIGSDDAEARVAELLEQKALASTFMFSYLGGQDGSFLMR--PAEEMPA 119

Query: 121 DYDPRSRGWYQEAKKNKRIFITEPYLDTEGKNFLVSISSPVADTMNNFIGAMYFDVDLSR 180
           DYDPR+R WY++A       +TEPY+D      ++SI++P      N IG +  D+ L  
Sbjct: 120 DYDPRARPWYKDAIAAGGSTLTEPYVDAASGELVISIATPAQQNGRN-IGVVGGDLGLKV 178

Query: 181 IQKNVDDINLFEAGYVFITSNTGKVIIHSNTDELGKNVKDIYNGFR--LDKGKVVLSVNG 238
           + + ++ ++    G+ F+ S  GK+++H +  ++ K++ +++ G    LD       ++G
Sbjct: 179 LVEIINALDFNGMGHAFLVSGDGKILVHPDGSKVMKSLGELFPGHTPSLDANYSEAELDG 238

Query: 239 VNKWLYTSPILG---GDWFIIAVIDESIAMQSINKMKYELIF--YSAIGLVFGGLILVFI 293
             + L  S + G     W++   +D++ A  ++   +   +    +A+G++   L+L  +
Sbjct: 239 QTRILSFSRVQGLPSVSWYVGISLDKAKAYAALASFRTSAVVAALTAVGVIL--LLLGML 296

Query: 294 LRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFNSFTEMLGSQIRQLKT 353
           +R LM PL  +  A+ +IA G GDLT++L      EF ELA  FN F E + + IR++ +
Sbjct: 297 MRVLMRPLTDMGRAMANIAEGEGDLTRRLAVQSKDEFGELASAFNRFVERIHTSIREVSS 356

Query: 354 IASGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVANSAQVAADAAKE 413
               V + A +    +  S    ++Q      +A A+NE+   A E+A +A  A+  A  
Sbjct: 357 ATQQVNEVAARVLAASNSSMANSDEQASRTNSVAAAINELGAAAQEIARNAADASQQASG 416

Query: 414 GESASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLL 473
               + +G  VV +   A++ LS +I +S   ++ L   T  I  +L+VI  I++QTNLL
Sbjct: 417 ARHQAEDGRQVVEQNIAAMRELSAKISASCAQIEALNAKTVDIGQILEVIKGISEQTNLL 476

Query: 474 ALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDES 533
           ALNAAIEAARAGE+GRGFAVVADEVR LA RTQ S  +I ++IEQLQ GA    ++M ES
Sbjct: 477 ALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQSSAQEIQQMIEQLQVGAGASVQTMTES 536

Query: 534 KLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLS 593
           + +++  V   ++  E++  V Q I  I  MN  +A+A EEQ+ V E +N +   I  L+
Sbjct: 537 QRQSESSVSIADRAGERLGEVTQRIGEIDGMNQSVATATEEQTAVIESLNMDITEINTLN 596

Query: 594 ---IKLSEAASNAGTEMNAQVSKVKEQNELLNEFKI 626
              ++  ++   A  +++ Q  ++K   +L++ F+I
Sbjct: 597 QQGVENLQSTLRACGDLDQQARRLK---QLVDSFRI 629