Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  293 bits (750), Expect = 2e-83
 Identities = 192/630 (30%), Positives = 328/630 (52%), Gaps = 15/630 (2%)

Query: 5   FVKKLIFISSFILLVTVAFVVWEGYTTAKKEVSVVIEDGINEIINKTERFVSLKLESDIS 64
           F  K++  +S +++       +      +  + V +++ +N+    T   +   L   I 
Sbjct: 7   FSHKILLAASLVVIAAFTLFTFYNDYLQRNALHVQLKENLNQTSESTAGNIRNWLSGRIL 66

Query: 65  LASSIVDSISLRISDEQYINDIINGNAIKKAFLSTGFGFDSNGKVIENDPNWEPEDDYDP 124
           L  ++ ++ S   S ++  N ++    +   F+S   G  S+G  +   P+ +   DYDP
Sbjct: 67  LVENLAENASSPQSPQEQ-NRVLGQPTLIATFMSIYQG-RSDGSFVTQPPD-DMSADYDP 123

Query: 125 RSRGWYQEAKKNKRIFITEPYLDTEGKNFLVSISSPVADTMNNFIGAMYFDVDLSRIQKN 184
           R+R WY +A +  +  +TEPYLD   K  +V++++P+    +   G +  D+ L  + K 
Sbjct: 124 RTRPWYVDALRAGKTILTEPYLDAVTKGLVVTLATPIKGD-SGVSGVIGGDLSLEILVKM 182

Query: 185 VDDINLFEAGYVFITSNTGKVIIHSNTDELGKNVKDIY--NGFRLDKGKVVLSVNGVNKW 242
           +  + +   GY F+    G++++H +T  + K + ++Y  N  RL +        G  + 
Sbjct: 183 ISSLRMHGDGYAFLVDANGRILVHPDTSLVMKTLAEVYPANTPRLSQDLSESEYAGKTQI 242

Query: 243 LYTSPILG---GDWFIIAVIDESIAMQSINKMKYELIFYSAIGLVFGGLILVFILRRLMS 299
           L  + + G    +W++   +D+ IA  ++ + +   I  + I +V   L+L  +L  L+ 
Sbjct: 243 LTFAHVDGLPSVNWYVGVAMDKDIAYAALGEFRNSAIVATVIAVVLIILLLGMLLSVLLR 302

Query: 300 PLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFNSFTEMLGSQIRQLKTIASGVL 359
           PL  +  A+ DIA+G GDLTK+L      EF  L  GFN F E +   +R++ +    + 
Sbjct: 303 PLNLMGRAMHDIAAGEGDLTKRLVIESQDEFGHLGNGFNLFVERIHDSMREVASSTVQLN 362

Query: 360 DGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVANSAQVAADAAKEGESASL 419
           + A +  N +  S L  +QQ      +A A+NE+     E+A +A  A+  + +  + + 
Sbjct: 363 EVALRVLNASNSSMLNSDQQSHRTNSVAAAINELGAATQEIAQNAARASGHSSDARTLAS 422

Query: 420 EGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLLALNAAI 479
           +G  VV +  +A+ RLS RI S+   ++ L   T  I  +LDVI  I+ QTNLLALNAAI
Sbjct: 423 DGQDVVGQNIEAMSRLSKRISSASGQIETLNTKTANIGQILDVITGISQQTNLLALNAAI 482

Query: 480 EAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETDI 539
           EAARAGE+GRGFAVVADEVR+LA RTQ+S  Q+ E+IEQLQ GA+     M++S+ E+  
Sbjct: 483 EAARAGEAGRGFAVVADEVRSLAHRTQESASQVQEMIEQLQSGAREAVSIMNDSQRESVE 542

Query: 540 VVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLS---IKL 596
            V   N+    +  V + I  I  MN  +A+A EEQ+ V E IN +   I  L+   ++ 
Sbjct: 543 TVGIANKAVASLEHVTERIGEIDGMNQSVAAATEEQTAVVEAINVDITEINTLNQQGVEN 602

Query: 597 SEAASNAGTEMNAQVSKVKEQNELLNEFKI 626
             A   A T++  Q +++    +L+  F+I
Sbjct: 603 LNATLRACTDLEQQSTRL---TQLVGSFRI 629