Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  203 bits (517), Expect = 1e-56
 Identities = 143/400 (35%), Positives = 212/400 (53%), Gaps = 13/400 (3%)

Query: 226 RLDKGKVVLSVNGVNKWLYTSPILGGDWFIIAVIDE-SIAMQSINKMKYELIFYSAIGLV 284
           RL+KGK   +V G +KWL   P+L  DW    ++ + S  +       +     +A+ + 
Sbjct: 132 RLNKGKS--AVPGRDKWL---PVLQ-DWLPFILVSQLSFLIGVWLNSHWGFALAAALSVP 185

Query: 285 FGGLILVFILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFNSFTEML 344
            G L L +  R     L+  +    D       L  ++ T+     + L +   S    +
Sbjct: 186 LGLLGLSWQQRGTKRLLRLAEQTTSD------PLIAQMYTDSRGPQARLEMSILSQEARM 239

Query: 345 GSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVANSA 404
            + + +L+  A  +   A ++ + A  S + +E+Q  E EQ+A A+N+MA T  EVA+  
Sbjct: 240 KTCLTRLQDTAEHLNSQARQSNSLANASSIGLERQRVETEQVAAAINQMAATTQEVASHV 299

Query: 405 QVAADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVIN 464
             AADA ++    +  G  +  ET +AIQRLS  +G +   V  L K +D I  V+DVI 
Sbjct: 300 NRAADATQQANELTRRGRDIAGETREAIQRLSTSVGETGLTVTRLAKDSDEIGGVVDVIK 359

Query: 465 DIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAK 524
            IADQTNLLALNAAIEAARAGE GRGFAVVADEVR LAQRT +ST QI  +I +LQ+ A 
Sbjct: 360 GIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTGQIHGLIAKLQQTAT 419

Query: 525 NVSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINN 584
           +   +MD  + + +  V +  + ++ +  + +A+  I+DM  QIA+A EEQS VAEEIN 
Sbjct: 420 DAVHTMDTGRRQAEEGVARVLEADQALVGISEAVANITDMTTQIATATEEQSAVAEEINR 479

Query: 585 NTVNIKDLSIKLSEAASNAGTEMNAQVSKVKEQNELLNEF 624
           N   I  L+ + S+ A  +             Q  L+  F
Sbjct: 480 NIATIASLADQTSDEARRSAVLSGELTDTANSQYSLVERF 519