Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  214 bits (546), Expect = 7e-60
 Identities = 129/330 (39%), Positives = 193/330 (58%), Gaps = 2/330 (0%)

Query: 274 ELIFYSAIGLVFGGLILVFILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSEL 333
           +L+  + I L+ G    + I R++  PL +   A + IA G  DLT  L T    E   L
Sbjct: 292 QLLTVAVIVLLLGIFAAILITRQITRPLDSTVIAARRIADG--DLTNDLSTTRQDELGLL 349

Query: 334 ALGFNSFTEMLGSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEM 393
                  T  L + I  +    + +   AE+ +  +E +   V QQ  E++Q+ATAMN+M
Sbjct: 350 QNTMQHMTVSLRTLIGGISNGVTQIATAAEELSAVSEQTSAGVTQQKLEVDQVATAMNQM 409

Query: 394 AMTASEVANSAQVAADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKAT 453
           A T  EVA + + A+ AA++    +  GSSVV   T  I +L+  +G   E ++ L++ +
Sbjct: 410 ASTVQEVAQNTEDASQAARQASDRAAHGSSVVQHATREISQLAGEVGQLGEAMQRLIQDS 469

Query: 454 DRIETVLDVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQIS 513
           D+I  V+DVI  +A+QTNLLALNAAIEAARAGE GRGFAVVADEVR+LAQRTQ ST +I 
Sbjct: 470 DKIGGVIDVIKAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQSSTTEIE 529

Query: 514 EIIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAE 573
            +I+ LQ+G    S  M+ S+  T+  V    Q  E +  +  +I  I  M+ QI++AAE
Sbjct: 530 ALIKSLQDGTGAASELMNASRQRTEGTVALARQAEESLLEITHSIVTIEQMSQQISAAAE 589

Query: 574 EQSLVAEEINNNTVNIKDLSIKLSEAASNA 603
           EQS V +EIN + ++++D++ + + A   +
Sbjct: 590 EQSAVTDEINRSVISVRDIADQSATATEQS 619



 Score = 40.4 bits (93), Expect = 2e-07
 Identities = 55/282 (19%), Positives = 111/282 (39%), Gaps = 42/282 (14%)

Query: 338 NSFTEMLGSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAM-- 395
           +S    +GS   QL   A   +D A     + +   + + Q +Q+ +Q+  ++ + +M  
Sbjct: 208 DSLIAQVGSARNQLPNKAGPAVDEALAALQQYKSLMVSISQLMQQNDQIRDSLRQQSMDI 267

Query: 396 -TASEVANSAQVAADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATD 454
            T++E   + QV + A KE +SA      V    T A+  L + I +++   +++ +  D
Sbjct: 268 VTSAEKLMAGQVVS-ANKEKDSA------VTQLLTVAVIVLLLGIFAAILITRQITRPLD 320

Query: 455 RIETVLDVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISE 514
                   I D  D TN L+     E      + +   V    +RTL         QI+ 
Sbjct: 321 STVIAARRIAD-GDLTNDLSTTRQDELGLLQNTMQHMTV---SLRTLIGGISNGVTQIAT 376

Query: 515 IIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEE 574
             E+L   ++  S  + + KLE D                            Q+A+A  +
Sbjct: 377 AAEELSAVSEQTSAGVTQQKLEVD----------------------------QVATAMNQ 408

Query: 575 QSLVAEEINNNTVNIKDLSIKLSEAASNAGTEMNAQVSKVKE 616
            +   +E+  NT +    + + S+ A++  + +     ++ +
Sbjct: 409 MASTVQEVAQNTEDASQAARQASDRAAHGSSVVQHATREISQ 450



 Score = 29.6 bits (65), Expect = 4e-04
 Identities = 44/239 (18%), Positives = 100/239 (41%), Gaps = 17/239 (7%)

Query: 296 RLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFNSFTEM--LGSQIRQLKT 353
           ++ + +  + S ++++A    D ++      D+     ++  ++  E+  L  ++ QL  
Sbjct: 401 QVATAMNQMASTVQEVAQNTEDASQAARQASDRAAHGSSVVQHATREISQLAGEVGQLGE 460

Query: 354 IASGVLDGAEKTANEAEVSRLVVEQQ----LQELEQLATAMNE---MAMTASEVANSAQV 406
               ++  ++K     +V + V EQ     L    + A A  +    A+ A EV + AQ 
Sbjct: 461 AMQRLIQDSDKIGGVIDVIKAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQR 520

Query: 407 AADAAKEGES---ASLEGSSVVHETTDAI-QRLSIRIGSSVEDVKELVKATDRIETVLDV 462
              +  E E+   +  +G+    E  +A  QR    +  + +  + L++ T  I T    
Sbjct: 521 TQSSTTEIEALIKSLQDGTGAASELMNASRQRTEGTVALARQAEESLLEITHSIVT---- 576

Query: 463 INDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQE 521
           I  ++ Q +  A   +        S      +AD+  T  +++  ST++++ +   LQ+
Sbjct: 577 IEQMSQQISAAAEEQSAVTDEINRSVISVRDIADQSATATEQSAASTVELARLGSNLQD 635