Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  307 bits (787), Expect = 8e-88
 Identities = 190/598 (31%), Positives = 324/598 (54%), Gaps = 10/598 (1%)

Query: 2   NVGFVKKLIFISSFILLVTVA-FVVWEGYTTAKKEVSVVIEDGINEIINKTERFVSLKLE 60
           ++GF KK++  ++ I++V  + F+V   Y   ++ +   ++  + ++   T + +   LE
Sbjct: 3   SLGFSKKILLAAALIVVVAFSVFIVVNDYRQ-RQSLKSSVKSELQQLGTLTTQNIQTWLE 61

Query: 61  SDISLASSIVDSISLRISDEQYINDIINGNAIKKAFLSTGFGFDSNGKVIENDPNWEPED 120
           S + L  S+   I+    +   +   I   A  ++F  + FG  S   V+ + P+     
Sbjct: 62  SRMQLLQSMSQQIAADGKELPQLQRAIGLPAYSESFQLSYFG--STEGVMFSVPSANRPA 119

Query: 121 DYDPRSRGWYQEAKKNKRIFITEPYLDTEGKNFLVSISSPVADTMNNFIGAMYFDVDLSR 180
           DYDPR+RGWY+ A+      +TEPY+       ++++++PV    N F+G    D+ L  
Sbjct: 120 DYDPRARGWYKAAQNAPGTIVTEPYIAASSGKLVMTMATPVK-FQNQFVGVAGADIALDN 178

Query: 181 IQKNVDDINLFEAGYVFITSNTGKVIIHSNTDELGKNVKDIY--NGFRLDKGKVVLSVNG 238
           + K ++ +N    GY F+ S  GK+++H ++  + KN+ + Y  N  ++  G   +    
Sbjct: 179 VTKIINSLNFDGHGYAFLVSADGKILVHPDSKLVLKNISEAYPTNTPKITTGVTEIDSGK 238

Query: 239 VNKWLYTSPILG---GDWFIIAVIDESIAMQSINKMKYELIFYSAIGLVFGGLILVFILR 295
             + +  +P+ G    +W++  V+++  A   + + +   I    + +V   L+L  ++R
Sbjct: 239 NPEIISFTPVQGVSTANWYVALVLEQDSAYAMLAEFRASAITAMVVVVVVIILLLGLLIR 298

Query: 296 RLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFNSFTEMLGSQIRQLKTIA 355
            LM PL  +  A++DIA G GDLTK+L      EF ELA  FN F E + + IR++ + A
Sbjct: 299 VLMQPLHQMGRAMRDIADGEGDLTKRLAITSQDEFGELAESFNRFVERIHTSIREVASTA 358

Query: 356 SGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVANSAQVAADAAKEGE 415
           + + + A +    +  S    +QQ    E +A A+NE+   A E+A +A   +  + +  
Sbjct: 359 AQLGEVATRVVKVSNASMGNSDQQANRTESVAAAINELGAAAQEIAQNAARTSQQSSDAS 418

Query: 416 SASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLLAL 475
             + +G +VV +T  A+  LS +I  S  +++ L   T  I  +L+VI  I+ QTNLLAL
Sbjct: 419 GLASDGQNVVQQTIKAMNELSGKISESCVNIESLNGKTANIGQILEVITSISQQTNLLAL 478

Query: 476 NAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKL 535
           NAAIEAARAGE+GRGFAVVADEVR LA RTQ S  Q+  +IE+LQ GA++   +M ES+ 
Sbjct: 479 NAAIEAARAGEAGRGFAVVADEVRNLAHRTQDSAQQVQTMIEELQVGARDAVTNMTESQR 538

Query: 536 ETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLS 593
           +++  V   N   E++  V + I  I+ MN  +A+A EEQ+ V E IN +  +I  L+
Sbjct: 539 QSEDSVGIANLAGERLGSVTRRIEEINGMNQSVAAATEEQTSVVESINVDITHINTLN 596