Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  248 bits (632), Expect = 8e-70
 Identities = 164/520 (31%), Positives = 273/520 (52%), Gaps = 14/520 (2%)

Query: 118 PED----DYDPRSRGWYQEAKKNK-RIFITEPYLDTEGKNFLVSISSPVADTMNNFIGAM 172
           PED    +YDPR R WY+ A  N  +   ++ Y        LVS    + + + N  G +
Sbjct: 128 PEDPKMSNYDPRVRPWYKTAMANAGKTVRSDAYYWANDDAVLVSTIRAIPNKLGNPGGVV 187

Query: 173 YFDVDLSRIQKNVDDINLFEAGYVFITSNTGKVIIHSNTDELG-KNVKDIYNGF----RL 227
             DV L ++   V  I L E+GY+ +    G V++     E   K + ++ +GF    + 
Sbjct: 188 NIDVSLKQLTNIVKQIKLGESGYLMLMEKNGTVLVDPKQPEHNFKKLGELGDGFSELAKT 247

Query: 228 DKGKVVLSVNGVNKW--LYTSPILGGDWFIIAVIDESIAMQSINKMKYELIFYSAIGLVF 285
             G V +++NG      +Y+S  LG  W  I +I +   M S  ++ + +   +A+  V 
Sbjct: 248 ASGLVEVTLNGERYMANVYSSEQLG--WNFIGLIKQDEVMASATRLTWLIGIIAAVLAVV 305

Query: 286 GGLILVFILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFNSFTEMLG 345
             ++     R ++ P+ ++ S ++ IA G GDLT+ L      E ++LA  FN F   + 
Sbjct: 306 FAIVGASFARVIVRPIHSVSSGLEGIAGGEGDLTQNLAVRGKDETAQLAGWFNKFLTAIR 365

Query: 346 SQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVANSAQ 405
           S I+ +   A  +L+ +  +   +        +Q + ++ ++TA +EM  T++EVA S  
Sbjct: 366 SLIQHIGQAAGKILEASHSSTRVSNDMAEAAGRQREAVDMVSTAFHEMVATSNEVARSCS 425

Query: 406 VAADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVIND 465
            AAD+A  G+  + EG   + +   ++ +LS  +  S +D+ +L K +  I+++L+ I  
Sbjct: 426 QAADSADNGQQQAREGQRQIDDAVRSVDQLSEELTRSAKDMTQLEKDSAGIQSILNTIRS 485

Query: 466 IADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKN 525
           IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA+RT  ST +I  ++  L +   +
Sbjct: 486 IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAKRTSDSTAEIDSLLGNLAKRTAS 545

Query: 526 VSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNN 585
           V++ M  S   +   V K  Q       +++++  I DMN QIA+AAEEQ  VAE+IN +
Sbjct: 546 VAQQMHASLDVSQQSVTKIGQARSSFGQIRESVDVIRDMNTQIATAAEEQHQVAEDINRH 605

Query: 586 TVNIKDLSIKLSEAASNAGTEMNAQVSKVKEQNELLNEFK 625
              I   +  +++ + +A  +  +      E + L+ +FK
Sbjct: 606 ISQIHGDAQLIAQLSDSARADSRSLEMLSSELDGLVRKFK 645