Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  223 bits (567), Expect = 3e-62
 Identities = 138/354 (38%), Positives = 212/354 (59%), Gaps = 17/354 (4%)

Query: 275 LIFYSAIGLVFGGLILVFILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELA 334
           +I  +A+ +V G L    I R++ +PL+     ++ +ASG  DL++ L+ +   E  +L 
Sbjct: 289 IIAATALAMVLGILAAWVITRQITTPLQETLEVVERVASG--DLSRNLNVDRKDELGKLQ 346

Query: 335 LGFNSFTEMLGSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQ-------QLQELEQLA 387
                 T         L+ +  G+ DG  + A+ AE    V EQ       Q  E +Q+A
Sbjct: 347 ATIQRMTV-------SLRELVGGIRDGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVA 399

Query: 388 TAMNEMAMTASEVANSAQVAADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSSVEDVK 447
           TAM+EM  T  EVA +A+ A++AA   +  + +G  VV+E    I+RL+  +G+S E + 
Sbjct: 400 TAMHEMTATVQEVARNAEEASEAAVAADRQARDGERVVNEAIAQIERLASAVGNSSEAMG 459

Query: 448 ELVKATDRIETVLDVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQ 507
            L + +D+I +VLDVI  +A+QTNLLALNAAIEAARAGE+GRGFAVVADEVR+LAQRTQ+
Sbjct: 460 ALKQESDKIGSVLDVIKSVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQK 519

Query: 508 STMQISEIIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQ 567
           ST +I  +I +LQ G +  +  MD S+  +   VE T +    ++ + + +  I  MN Q
Sbjct: 520 STEEIEALIARLQSGTQQATTVMDSSRELSTSSVELTRRAGGSLANITKTVSSIQAMNQQ 579

Query: 568 IASAAEEQSLVAEEINNNTVNIKDLSIKLSEAASNAGTEMNAQVSKVKEQNELL 621
           IA+AAEEQS  AEEIN + +N++D+S + S AAS      + +++++    ++L
Sbjct: 580 IAAAAEEQSATAEEINRSIINVRDVSEQTS-AASEETAASSVELARLGNHLQVL 632



 Score = 41.2 bits (95), Expect = 1e-07
 Identities = 85/423 (20%), Positives = 162/423 (38%), Gaps = 65/423 (15%)

Query: 256 IAVIDESIAMQSINKMKYELIF--------YSAIGLVFGGLILVFILRRLMSPLKTLD-- 305
           IA ++E      IN+M YE+++         S +  +   L     L R    L+ LD  
Sbjct: 53  IAEVNELTLQLRINRMSYEVLYNAETAAKVRSTLDELDAALQTARNLLRSPENLQLLDVQ 112

Query: 306 -SAIKDIASGGGDLTKKLDT----------NLDKEFSEL------------ALGFNSF-- 340
             A +D      D++K +DT          N DK   +              L FN    
Sbjct: 113 IQATRDYRQSFEDMSKAIDTREASRSQMGENADKAVDQANRIEAELLKEDNILAFNGIVG 172

Query: 341 -TEMLGSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQELEQLA----TAMNEMAM 395
            ++++     Q++          EK AN+A      ++  +  +  LA    +  + M  
Sbjct: 173 VSKLIQQARFQVRGYTYSGRPDFEKDANKA------IDDAVTGINTLAGDISSTYSPMLQ 226

Query: 396 TASEVANSAQVAADAAKEGESASLE--------GSSVVHETTDAIQRLS-IRIGSSVEDV 446
            A    N  + A    ++ ++AS          G S++  + D I R +  R   S + V
Sbjct: 227 QAIAGLNGYRAAVGKYRDAQAASKAALDKMTTLGVSMLATSNDLITRQNKSRDADSAKSV 286

Query: 447 KELVKATDRIETVLDVIND--IADQ--TNLLALNAAIEAARAGESGRGFAV-VADEVRTL 501
           + ++ AT  +  VL ++    I  Q  T L      +E   +G+  R   V   DE+  L
Sbjct: 287 QMIIAAT-ALAMVLGILAAWVITRQITTPLQETLEVVERVASGDLSRNLNVDRKDELGKL 345

Query: 502 AQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRI 561
               Q+ T+ + E++  +++G   ++ + +E    T+      N    +   V  A+H +
Sbjct: 346 QATIQRMTVSLRELVGGIRDGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEM 405

Query: 562 SDMNLQIASAAEEQSLVA----EEINNNTVNIKDLSIKLSEAASNAGTEMNAQVSKVKEQ 617
           +    ++A  AEE S  A     +  +    + +   ++   AS  G    A  +  +E 
Sbjct: 406 TATVQEVARNAEEASEAAVAADRQARDGERVVNEAIAQIERLASAVGNSSEAMGALKQES 465

Query: 618 NEL 620
           +++
Sbjct: 466 DKI 468