Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 665 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  225 bits (574), Expect = 4e-63
 Identities = 162/544 (29%), Positives = 268/544 (49%), Gaps = 27/544 (4%)

Query: 103 FDSNGKVIENDPNWEPEDDYDPRSRGWYQEAKKNKRIFITEPYLDTEGKNFLVSISSPVA 162
           FD NG+  + DPN      Y    R W+QEA     +F+ +P +D    +   ++ +PV 
Sbjct: 129 FDLNGRY-DGDPN------YYTNKRPWWQEALDKGGLFVGDPAVDANDGSISATVKTPVY 181

Query: 163 DTMNNFIGAMYFDVDLSRIQKN-VDDINLFEAGYVFITSNTGKVIIHSNTDEL---GKNV 218
                 +G    D+ +  I K+ +  I    +G  F+ +  GK++     +E    G  +
Sbjct: 182 GANGQLLGIGGMDILIDTIGKSLLAPIKYQGSGQAFLMTGDGKLVYFPGFNESFPPGSAI 241

Query: 219 KDIYN----GFRLDKGKVVLSVNGVNKWLYT-SP------ILGGD-----WFIIAVIDES 262
           + + N    GF      +    +G    +Y  SP       + GD     W +  ++   
Sbjct: 242 QKVDNNGSEGFTALGQLMQRQSSGFTDVVYQGSPQRVAFVEVAGDYPKQKWHLAFMLPHE 301

Query: 263 IAMQSINKMKYELIFYSAIGLVFGGLILVFILRRLMSPLKTLDSAIKDIASGGGDLTKKL 322
           +    +    +     S   ++  G+ +  +L  L   L++L  A+ ++ASG GDL++++
Sbjct: 302 VIEAPVRDAFWNACLMSLGIILLVGVTVWLLLLPLRRQLESLLGAMDNMASGEGDLSRRI 361

Query: 323 DTNLDKEFSELALGFNSFTEMLGSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQE 382
           D   + E   +A  FN F   +   +RQ + +   V DG  +     +V+   V +Q  +
Sbjct: 362 DIQREDELGLMADAFNRFAAKVQQMLRQTRDLTRDVDDGIVEARKICDVAVGAVSRQKAQ 421

Query: 383 LEQLATAMNEMAMTASEVANSAQVAADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSS 442
           ++ +A A  EMA T+ E+A SAQ  AD A+  ++ + +G  +V E T  I+ LS R+  +
Sbjct: 422 IDSVAAAAIEMAHTSQEMAASAQRTADFAETAQTQADDGKQIVAEATSGIETLSSRVIEA 481

Query: 443 VEDVKELVKATDRIETVLDVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLA 502
              +KEL  ++++I  VL VI +IA+QTNLLALNAAIEAARAGE GRGFAVVADEVRTLA
Sbjct: 482 AAVIKELRGSSEKIGEVLSVIRNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLA 541

Query: 503 QRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRIS 562
            RTQ ST  I  II++LQ+ A      M+    +       T+QV + +  +  AI  I 
Sbjct: 542 SRTQDSTANIQGIIQRLQQSAMEAESVMEAGVNDAKRGQLLTSQVQDSLGKITDAIGAIL 601

Query: 563 DMNLQIASAAEEQSLVAEEINNNTVNIKDLSIKLSEAASNAGTEMNAQVSKVKEQNELLN 622
               +I  A  +Q++VA+E+  N  N++ LS     A+      + A        +  ++
Sbjct: 602 QQTTEITVAIGQQAVVADEVAQNVENVRGLSDDSHSASQELAVSLKAFEQLTHALSGNIS 661

Query: 623 EFKI 626
           +F++
Sbjct: 662 QFRV 665