Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  213 bits (543), Expect = 2e-59
 Identities = 134/355 (37%), Positives = 211/355 (59%), Gaps = 8/355 (2%)

Query: 275 LIFYSAIGLVFGGLILVFILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELA 334
           ++ +  I LV  G  L  I+R +M P++ +  AI  I +   DLT + DT +D E  ++A
Sbjct: 271 IVVFILITLVLIGFTLA-IIRSIMEPVQRISDAISRIEATK-DLTLRCDTKVDDEIGQIA 328

Query: 335 LGFNSFTEMLGSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMA 394
             FNS  E   S IR++ T    V    ++ +  +  +   V +QL E + +ATA+ EM 
Sbjct: 329 RHFNSMVESFQSLIREVLTSVEVVNHSCQELSENSMRASEGVGRQLNETDMVATAITEMG 388

Query: 395 MTASEVANSAQVAADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATD 454
            T  E+A++ ++AA+ A      + +G   V  T + IQ L+ ++  S + V EL K ++
Sbjct: 389 ATIDEIASNTELAAERAGNTHDNAQQGQVGVEHTIEKIQALAAQLTDSAQVVSELEKDSE 448

Query: 455 RIETVLDVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISE 514
            I +VLDVI  IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ+ST +I+ 
Sbjct: 449 TIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAMRTQESTEEIAG 508

Query: 515 IIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQA---IHRISDMNLQIASA 571
           II+ LQ   +++ + M+ ++ +    +E  +Q     +L++Q    +  I DM+ QIA+A
Sbjct: 509 IIQTLQSRTRSIVQLMEATQRQG---IESADQAASAGALLEQINADVTNIMDMSTQIAAA 565

Query: 572 AEEQSLVAEEINNNTVNIKDLSIKLSEAASNAGTEMNAQVSKVKEQNELLNEFKI 626
            EEQS+VA E+N N V I+D++ + ++AA       +   ++ +   + ++ FKI
Sbjct: 566 IEEQSMVASEVNKNVVVIRDIAAESAQAADENAKASDDVKARTQVLYQAVSLFKI 620