Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 705 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  221 bits (562), Expect = 1e-61
 Identities = 163/536 (30%), Positives = 269/536 (50%), Gaps = 38/536 (7%)

Query: 121 DYDPRSRGWYQEAKKNKRIFITEPYL---DTEGKNFLVSISSPVADTMNNFIGAMYFDVD 177
           ++  R   WY  AK  K+  + EPYL          + S++ PV     +F G +  DV+
Sbjct: 176 EFGVREAEWYLCAKDTKQPCLMEPYLYEISPGNTALMTSLTVPVV-VGGSFRGVIGVDVN 234

Query: 178 LSRIQKNVDDIN--LFEA-GYVFITSNTGKVIIHSNTDE----LGKNVKDIY----NGFR 226
           L   QK +D+++  L++    V + S  G V+  S+ D+    LG+++         G  
Sbjct: 235 LPVFQKLIDELSASLYQGKAKVTLLSQKGLVVAASHYDKKARPLGESIAPSLASQLTGLH 294

Query: 227 LDKGKVVLSVNGVNKWLYTSPILGGDWFIIAVIDESIAMQSINKMKYELIFYSAIGLVFG 286
              G +    N +  +    P+    W ++  + ++ A Q+ N M   +   SA+    G
Sbjct: 295 RQGGYLEQGDNIIVAYPIEIPLAKAQWSLVIEVAKADAYQAANAMDKAM---SAMASSLG 351

Query: 287 GLILV--------------FILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSE 332
            L+L+               ++R +++PLK + S ++++AS  GDLT+++      E   
Sbjct: 352 SLLLIVGVIVSLIAVVTISLVIRSIVAPLKVIQSRVENLASAEGDLTQQVTVESHAELIA 411

Query: 333 LALGFNSFTEMLGSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNE 392
           L  G N F   L   I +LK +AS     ++  A  A+ +   V +Q  ++E + TA+NE
Sbjct: 412 LGGGINGFINKLRLLIGELKELASRSQAESQVAAEIAQQTHNSVNRQYSDIESVVTAVNE 471

Query: 393 MAMTASEVANSAQVAADAAKEGESASLE---GSSVVHETTDAIQRLSIRIGSSVEDVKEL 449
           M+ TA EVA +++     A E E+ +L    G   + +    +  +S     + E V ++
Sbjct: 472 MSATALEVAKASE---QTASETEAMTLNVKAGEDSLSQAMGYVTHMSQESLLAKEAVGKV 528

Query: 450 VKATDRIETVLDVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQST 509
            +++  I  +L+VI+ IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA +TQ ST
Sbjct: 529 AESSTNISKILEVISAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSST 588

Query: 510 MQISEIIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIA 569
            +I ++IE LQ    + S+ +D+        V +T      ++ +   I  +S     IA
Sbjct: 589 DEIGKLIEALQREVNSASQIIDQGVDGAQRAVAQTESALSSLNTIVNQIQEVSSQVTHIA 648

Query: 570 SAAEEQSLVAEEINNNTVNIKDLSIKLSEAASNAGTEMNAQVSKVKEQNELLNEFK 625
           +AAEEQS V EE++ N   I D + +L+  A  A     +    V++Q++ L + K
Sbjct: 649 TAAEEQSAVTEEVSRNITGISDSASELARLADEAQQSSASLAGLVEQQHQQLGKLK 704