Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  244 bits (624), Expect = 6e-69
 Identities = 154/487 (31%), Positives = 259/487 (53%), Gaps = 27/487 (5%)

Query: 152 NFLVSISSPVADTMNNFIGAMYFDVDLSRIQKNVDDINLFEAGYVFITSNTGKVIIHSNT 211
           N+LV I    +       G     + L+ +  N+    + E G V++T   G++ IH  +
Sbjct: 167 NYLVQIEGKPS-------GVAGVGLSLNSLADNIKQYKIGEQGRVYLTDGNGQIKIHGQS 219

Query: 212 DELGKNVKDIYNGFRLDKGKVVLSV----------NGVNKWLYTSPILGGDWFIIAVIDE 261
              GK +    +   +   + +LS           NGV+  + +  I    W++IA + +
Sbjct: 220 QFAGKQL----SALGIKDPQALLSQQTFATSEYDNNGVDTLVASRYIPSIGWYLIAEVPQ 275

Query: 262 SIAMQSINKMKYELIFYSAIGLVFGGLIL---VFILRRLMSPLKTLDSAIKDIASGGGDL 318
                +INK  ++L   + +GL+   +I+    +++ RL+SP   L   +K I  G GDL
Sbjct: 276 DELFGAINKASWQL---ALMGLILAAIIMFTSAWLINRLISPFGELADMLKSIGEGEGDL 332

Query: 319 TKKLDTNLDKEFSELALGFNSFTEMLGSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQ 378
           + +LD +   E   +A  +N F   L   ++ +   A+ +    E+  N+A+     +  
Sbjct: 333 SLRLDDSRQDETGSMAASYNQFVTYLSKTLQSVSATANDLFQAVERIDNQAKHMEHEIND 392

Query: 379 QLQELEQLATAMNEMAMTASEVANSAQVAADAAKEGESASLEGSSVVHETTDAIQRLSIR 438
           Q+ ++EQ+ATA++EM MTA E+A+SA  AA+ A+  + +  +G+  V  T  ++  +S +
Sbjct: 393 QVSKIEQVATAIHEMGMTAQEIASSANNAAENAQVADQSVNQGNQSVQNTIASVASMSEQ 452

Query: 439 IGSSVEDVKELVKATDRIETVLDVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEV 498
           + ++ E V +L +    I+TVL+VI  +++QTNLLALNAAIEAARAGE GRGFAVVADEV
Sbjct: 453 LLTTSETVSQLAEDASSIDTVLEVIRGVSEQTNLLALNAAIEAARAGEQGRGFAVVADEV 512

Query: 499 RTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQAI 558
           RTLA R+  ST  I  IIE+LQ     V  ++ +S  ++    ++ +   E +  + + I
Sbjct: 513 RTLASRSHASTEDIRHIIEKLQAKTTEVVNAIGQSTNQSQQSQQEASLSGEHLHSIAENI 572

Query: 559 HRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLSIKLSEAASNAGTEMNAQVSKVKEQN 618
             +S+M++QIA+A EEQS V  EIN +   I D+S   S+       + +       + N
Sbjct: 573 QAMSEMSMQIATATEEQSNVVGEINPHVTAIADISRSSSDVVRQTSLDCSDLREMAVQLN 632

Query: 619 ELLNEFK 625
           EL++ FK
Sbjct: 633 ELVSRFK 639