Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 632 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  269 bits (687), Expect = 3e-76
 Identities = 186/646 (28%), Positives = 326/646 (50%), Gaps = 37/646 (5%)

Query: 3   VGFVKKLIFISSFILLVTVAFVV--WEGYTTAKKEVSVVIEDGINEIINKTERFVSLKLE 60
           +GF K L+  +S + LV +  ++  W  Y   K+     + D +  +     R  S K+ 
Sbjct: 1   MGFKKSLV--ASMVTLVALCLLISNWLSYVQIKEATIARVNDKLTGVT----RNESAKVA 54

Query: 61  SDISLASSIVDSISLRISDEQYINDIINGNAIKKAFLSTG---FGFDSNGKV-IENDPNW 116
           +     +  +D ++       Y ++ +N   +           FGFD       E    W
Sbjct: 55  TWFGAKAQAMDELARHYRLGSYQDNYVNTARLATDLSGVARIYFGFDDGSAYSTETGDKW 114

Query: 117 ----EPEDDYDPRSRGWYQEAKKNKRIFITEPYLDTEGKNFLVSISSPVADTMNNFIGAM 172
                    YDPR+R WYQ+ K   ++ +T+ Y+D    + ++SI   + D      G +
Sbjct: 115 LNGKAIPGKYDPRTRPWYQQGKATTQLDVTDIYIDDGSGHKVISILKNLGD------GVV 168

Query: 173 YFDVDLSRIQKNVDDINLFEAGYVFITSNTGKVII-HSNTDELGKNVKDIYNGFRLDKGK 231
             D++L+ +   V  I+ +      IT  TGKV+   S T   G    D   G    + K
Sbjct: 169 LGDIELTYLHDVVSAID-YPGAVALITDQTGKVLASESPTLVSGSRFSDF--GLPQVQQK 225

Query: 232 VVLS--------VNGVNKWLYTS--PILGG-DWFIIAVIDESIAMQSINKMKYELIFYSA 280
           ++ S        ++GV+K  ++   P++ G  WF+   +D+S A   +++     +  SA
Sbjct: 226 IIGSDEVMQEYRIDGVDKLGFSKAIPLVNGKQWFLFIGLDKSNAYAVVDQALTSALVSSA 285

Query: 281 IGLVFGGLILVFILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFNSF 340
           I L+    IL+ +L  L  P+ +L + + +++ G GDLTK+L+ + + +  ++++G N F
Sbjct: 286 IMLLCAISILLGVLYLLYRPILSLKAMVTELSKGNGDLTKRLEIHCEDDLGQISMGINQF 345

Query: 341 TEMLGSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEV 400
              L + +R++   ++ +    E+   E E +R ++    +E EQ+  A+ EM+ TA++V
Sbjct: 346 IANLQAMMREVLQASAHISGSVERLNGETETNRHILSAHTKETEQIVAAVEEMSATANDV 405

Query: 401 ANSAQVAADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVL 460
           A +    A   +     +L    VV + T+ + RL   +  + + + ++ + T  I  VL
Sbjct: 406 AQNGSETASFTQLTNEQALASKQVVAQATETVNRLVREVEHTADKIGQIDRDTINITQVL 465

Query: 461 DVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQ 520
            VI DIADQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ ST +I E +  L+
Sbjct: 466 KVIGDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTAEIEETLSNLR 525

Query: 521 EGAKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAE 580
           + + +   SM+ +K         T +V   +  +  ++++I+D+N QIA+AAEEQS V+ 
Sbjct: 526 DASNSAIHSMEVTKQTCLETASTTERVATDLDAIGSSVNQINDLNTQIATAAEEQSSVSA 585

Query: 581 EINNNTVNIKDLSIKLSEAASNAGTEMNAQVSKVKEQNELLNEFKI 626
           EI  N   I D++ +L+ +  ++  E     +  ++  +++ +FK+
Sbjct: 586 EITRNMSAICDMANELARSGESSRNETVNLATANQQLEQIVGQFKL 631