Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  243 bits (621), Expect = 1e-68
 Identities = 153/453 (33%), Positives = 253/453 (55%), Gaps = 20/453 (4%)

Query: 175 DVDLSRIQKNVDDI-------NLFEAGYVFITSNTGKVIIHSNTDELGK-NVKDIYNGF- 225
           D  L  + K++DD+        + + G+V++    G V +HS+T ++GK ++  +Y G  
Sbjct: 172 DRGLVGLAKSLDDMVRLLKSFKIEDTGFVYLVDAKGDVKLHSDTSQIGKASLSSLYGGNV 231

Query: 226 ---RLDKGKVVLS---VNGVNKWLYTSPILGGDWFIIAVIDESIAMQSINKMKYELIFYS 279
               L+KG   L+   ++G    + +S I   DW+++A +  +     + +  Y+++ ++
Sbjct: 232 TRELLNKGDFGLTQTELDGETLLVASSYIPSMDWYLVAQVPRAEVFALLEESAYQILVWT 291

Query: 280 A-IGLVFGGLILVFILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFN 338
             I   F GL   F+   +  P+  +   ++DI  G GDL ++L    + E ++LA GFN
Sbjct: 292 VLIAAAFIGLS-TFVSASVSQPIAKVADMLQDIGQGEGDLRQRLPVEGNDELAQLAKGFN 350

Query: 339 SFTEMLGSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTAS 398
           SF E +   I ++   +  +   A+  AN+A+ ++   + Q  +   + TA+NEM  T  
Sbjct: 351 SFIEKIQHSIIEVTDTSVQLSHAAKDVANQAQQTQDDSQLQKDQTMMVVTAINEMGATVH 410

Query: 399 EVANSAQVAADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIET 458
           E+A +A  AAD AK+ ++AS  G  VV    D I +LS  +      ++ L   T  I +
Sbjct: 411 EIAGNAAQAADNAKDADNASSNGQIVVTRARDTINQLSQDVEQVGNVIESLATHTTSIGS 470

Query: 459 VLDVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQ 518
           +LDVI  ++DQTNLLALNAAIEAARAGE+GRGFAVVA+EVR LA RT  ST ++ ++I+ 
Sbjct: 471 ILDVIRAVSDQTNLLALNAAIEAARAGEAGRGFAVVAEEVRNLASRTAASTDEVQKMIDN 530

Query: 519 LQEGAKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLV 578
           LQ  A     +M +SK  +   V+  ++ +  ++ + Q I  I+DMN+Q+A+A EEQS V
Sbjct: 531 LQSEAARAVEAMTQSKSRSQEGVQAVDEASHTLTEISQQIGAITDMNIQVAAATEEQSTV 590

Query: 579 AEEINNNTVNIKDLSIKLSE---AASNAGTEMN 608
            E+IN N   I +++ + SE   A + A   +N
Sbjct: 591 VEDINRNVTEISEITQRTSETSQAVAQASQSLN 623



 Score = 40.8 bits (94), Expect = 2e-07
 Identities = 47/209 (22%), Positives = 93/209 (44%), Gaps = 21/209 (10%)

Query: 310 DIASGGGDL--TKKLDT--NLDKEFSELALGFNSF---TEMLGSQIRQLKTIASGV---- 358
           D AS  G +  T+  DT   L ++  ++     S    T  +GS +  ++ ++       
Sbjct: 427 DNASSNGQIVVTRARDTINQLSQDVEQVGNVIESLATHTTSIGSILDVIRAVSDQTNLLA 486

Query: 359 LDGAEKTANEAEVSR--LVVEQQLQEL-EQLATAMNEMAMTASEVANSAQVAADAAKEGE 415
           L+ A + A   E  R   VV ++++ L  + A + +E+      + + A  A +A  + +
Sbjct: 487 LNAAIEAARAGEAGRGFAVVAEEVRNLASRTAASTDEVQKMIDNLQSEAARAVEAMTQSK 546

Query: 416 SASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLLAL 475
           S S EG   V E +  +  +S +IG+  +   ++  AT+   TV++ IN      N+  +
Sbjct: 547 SRSQEGVQAVDEASHTLTEISQQIGAITDMNIQVAAATEEQSTVVEDIN-----RNVTEI 601

Query: 476 NAAIEAARAGESGRGFAVVADEVRTLAQR 504
           +   +  R  E+ +  A  +  +  LA R
Sbjct: 602 SEITQ--RTSETSQAVAQASQSLNQLAHR 628