Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  275 bits (703), Expect = 4e-78
 Identities = 185/640 (28%), Positives = 340/640 (53%), Gaps = 35/640 (5%)

Query: 1   MNVGFVKKLIFISSFILL-VTVAFVVWEGYTTAKKEVSVVIEDGINEIINKTERFVSLKL 59
           MN   +K+ I IS  I L + +  + W+ Y++ K   S+++++ + ++    ++    ++
Sbjct: 1   MNSYSLKQKILISVVIALSLVIGLLSWQSYSSQK---SLLLQNSLEQVQRLGDQQAE-RI 56

Query: 60  ESDISLASSIVDSISLRISDEQYINDIINGNAIKKA-----FLSTGFGFDSNGKVIENDP 114
           +  ++    IV +++ ++  +         NA+++A     F  T +G  + G+++++D 
Sbjct: 57  QEWLAGRQDIVGALASKVEGDSL-------NALQQAQASGRFQLTYYGTQA-GQMLDSDL 108

Query: 115 NWEPEDDYDPRSRGWYQEAKKNKRIFITEPYLDTEGKNFLVSISSPVADTMNNFIGAMYF 174
           + +    YDPR+R WY++A   + + +T+PY+D      +V+++  V+       G +  
Sbjct: 109 SID-RTGYDPRTRPWYKQATNERGLILTKPYVDVAYNVLVVTMAQAVSQ------GVVGG 161

Query: 175 DVDLSRIQKNVDDINLFEAGYVFITSNTGKVIIHSNTDELGKNVKDIYNGFRLDKGK--- 231
           D+ ++ + ++V+ + L   GY  +    G VI + +T +  K V DI N    +  +   
Sbjct: 162 DLSIASLVESVNRMTLPANGYAIMMHQDGTVIAYKDTSKAMKPVSDIDNDLNHNLPQQSR 221

Query: 232 -------VVLSVNGVNKWLYTSPILGGDWFIIAVIDESIAMQSINKMKYELIFYSAIGLV 284
                  +       +K ++   I   DW ++ V+D+      +  +    +  SA+ L+
Sbjct: 222 QAGTWLPMYFEHESRDKLVWGVDIPNTDWELVIVLDKETLEAPLTNLLLTQLGLSAVVLL 281

Query: 285 FGGLILVFILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFNSFTEML 344
              L + +++  L+ PL  +  A+  IA G GDLT++++ +   E   LA  FN F    
Sbjct: 282 LSVLAISWLVNLLLGPLGRVSQALARIADGNGDLTQRIEVDTQDEVGVLADSFNRFVGSQ 341

Query: 345 GSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVANSA 404
              I  ++ +A  +   AE +     ++   +++Q QE+  +ATA+ EMA   +E+A +A
Sbjct: 342 HQLISHIRHLAGELDADAEHSLKTNHLAVAELQRQQQEVAMVATAVTEMASATNEIAANA 401

Query: 405 QVAADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVIN 464
           +  A AA++  ++S +G  +V++T  +I  L+  +  + E +++L +    I ++L  I 
Sbjct: 402 ENTATAAQQSAASSFQGKELVNKTRSSINSLADEVTQATEVIEDLSRHAQSISSILATIQ 461

Query: 465 DIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAK 524
            IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR L++RTQ ST ++   IE LQ    
Sbjct: 462 GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEVHATIETLQRTTA 521

Query: 525 NVSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINN 584
                M+ S++     VE  N   + +  + QA++ ISDM  QIA+AAEEQ+ V  EI  
Sbjct: 522 KAVSLMESSQMLAGNSVEDANAAVKALEEITQAVNVISDMAGQIATAAEEQTQVTGEITQ 581

Query: 585 NTVNIKDLSIKLSEAASNAGTEMNAQVSKVKEQNELLNEF 624
           NTV IKD++ +++EAA +  T+  A  ++  + N  +  F
Sbjct: 582 NTVAIKDVTDEITEAAKSDLTQAQALKARANDLNAQVATF 621