Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  239 bits (610), Expect = 3e-67
 Identities = 154/513 (30%), Positives = 268/513 (52%), Gaps = 17/513 (3%)

Query: 124 PRSRGWYQEAKKNKRIFITEPYLDTEGK-NFLVSISSPVADTMNNFIGAMYFDVDLSRIQ 182
           P   GW+   + + +  +   + +  G+    ++   P      N  G +     L  + 
Sbjct: 137 PAQDGWFFSYRDSGQERMLNVFTEANGEIKLFINYQQP------NGRGLVGLAKSLDDMV 190

Query: 183 KNVDDINLFEAGYVFITSNTGKVIIHSNTDELGK-NVKDIYNGF-------RLDKGKVVL 234
           + +D   + E G+V++    G+V +H +  ++GK ++K +Y+         R D   +  
Sbjct: 191 QLLDSFKIEETGFVYLVDAKGEVKLHPDPSQIGKTSLKSLYSAANIGSLLNRSDFNLIDT 250

Query: 235 SVNGVNKWLYTSPILGGDWFIIAVIDESIAMQSINKMKYELIFYSAIGLVFGGLILVFIL 294
            + G   ++ +S I   DW+++A + E+     +    Y+++ ++ I +  G ++L  ++
Sbjct: 251 EIQGEKTFVASSYIPSMDWYLVAQVPEAEVFALLRDAVYQILIWTLI-IAAGFIMLAIVV 309

Query: 295 RRLMS-PLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFNSFTEMLGSQIRQLKT 353
              +S P+  + +  +DI  G GDL ++L  N   E ++LA GFNSF   +   + ++  
Sbjct: 310 AGSVSRPIAQVAAMFRDIGEGEGDLRQRLPVNGKDEIAQLAQGFNSFISKIQDSVIEVAQ 369

Query: 354 IASGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVANSAQVAADAAKE 413
            +  +   A+  +N+A+ +     +Q      + TA+NEM  T +E+A++A  AA AAK+
Sbjct: 370 TSEQLGLSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASNAAQAAVAAKD 429

Query: 414 GESASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLL 473
            ++ S  G  VV    D I +LS  +    E ++ L   T  I  +LDVI  I++QTNLL
Sbjct: 430 ADTESNSGQVVVTRARDTINQLSHDVEQVGEVIESLATHTKSIGGILDVIRAISEQTNLL 489

Query: 474 ALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDES 533
           ALNAAIEAARAGE+GRGFAVVADEVR LA RT  ST ++  +I++LQ  A     +M +S
Sbjct: 490 ALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEASRAVSAMAQS 549

Query: 534 KLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLS 593
           +  +   V   ++ ++ +  + + I  ISDMN+Q+A+A EEQS V E+IN N   I D++
Sbjct: 550 RARSHEGVTAVDEASQSLVGISKRIGLISDMNIQVAAATEEQSTVVEDINRNVTEINDIT 609

Query: 594 IKLSEAASNAGTEMNAQVSKVKEQNELLNEFKI 626
            + +  A  A     A        + L+ +FK+
Sbjct: 610 QRTASTAQAAAQASLALNQLAHRLDTLVAKFKV 642