Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  260 bits (665), Expect = 1e-73
 Identities = 155/371 (41%), Positives = 226/371 (60%), Gaps = 6/371 (1%)

Query: 259 IDESIAMQSINKMKYELIFYSAIGLVFGGLILVFILRRLMSPLKTLDSAIKDIASGGGDL 318
           +D S + Q+++ ++++LI    I  + G  I  FI + +  P+    +A+ DIA G GDL
Sbjct: 267 LDRSHSEQAMSDIRFKLIMIGFIAFLIGTAIAWFIAKSITRPIAETTNALNDIAEGEGDL 326

Query: 319 TKKLDTNLDKEFSELALGFNSFTEMLGSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQ 378
           T++++     E ++LAL FN F E + + + Q+    S +   AE+ +     ++ + ++
Sbjct: 327 TRRIEVKSKDEIAQLALAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITNETQQMAKR 386

Query: 379 QLQELEQLATAMNEMAMTASEVANSAQVAADAAKEGESASLEGSSVVHETTDAIQRLSIR 438
           Q  E EQ+ATAMNEMA T  EVA++A  AADAA     ++  G  +V +    I  L+  
Sbjct: 387 QHLETEQVATAMNEMAATVQEVAHNATDAADAATHASESTEHGKLLVEKVISTISLLADE 446

Query: 439 IGSSVEDVKELVKATDRIETVLDVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEV 498
           I  + + + EL + T +I++VL VI +IADQTNLLALNAAIEAARAGE GRGFAVVADEV
Sbjct: 447 IAHAAKAINELERNTAQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEV 506

Query: 499 RTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQAI 558
           RTLA RTQ ST +I ++IE LQ  AK+   +M+ S   T   V   ++  E +  + QA+
Sbjct: 507 RTLASRTQASTSEIQQMIEALQHSAKSTVSTMNTSTATTQNCVSLVHEAGEALEAITQAV 566

Query: 559 HRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLSIKLSEAA---SNAGTEMNAQVSKVK 615
             IS MN+QIASAA EQ  V+ EIN N  NI D++I  +E+A   + AG E+ AQ+S   
Sbjct: 567 STISQMNIQIASAANEQCAVSAEINKNVNNINDITINATESAVQTARAGDEL-AQLS--M 623

Query: 616 EQNELLNEFKI 626
               LL +F+I
Sbjct: 624 RLTTLLAQFRI 634