Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  229 bits (583), Expect = 4e-64
 Identities = 181/624 (29%), Positives = 304/624 (48%), Gaps = 39/624 (6%)

Query: 39  VIEDGINEIINKTERF-----VSLKLESDISLASSIVDSISLRISDEQYINDIINGNAIK 93
           ++E    E+  K +R        LK  + IS   +  ++      D +++N  ++ +   
Sbjct: 84  IVESTAEELPLKRDRLELAIAAVLKKNTQISSMYAQFEANGYDGLDSEFLNVNVSHSVAS 143

Query: 94  KAFLSTGFGFDSNGKVIENDPNWEPE------DDYDPRSRGWYQEAKKNKRIFITEPYLD 147
              L   +  + +G V  +      E      +++  R   WY  AK+  +  + EPYL 
Sbjct: 144 SGVLEIYYTRNDDGTVEHHQVEDSSEKYKTSLNEFGIRESEWYLCAKETLKPCLMEPYLY 203

Query: 148 --TEGKNFLVSISSPVADTMNNFIGAMYFDVDLSRIQKNVDDIN--LFEA-GYVFITSNT 202
             T G   L++  +  A     FIG +  DV+L   Q  +D ++  L++    V + S  
Sbjct: 204 EITPGNTALMTSLTVSAVKHKQFIGVVGVDVNLPVFQVLIDKLSKSLYDGQAKVTLLSTR 263

Query: 203 GKVIIHSNTDELGKNVKDIYNGFRLDKGKVVLSVNG---------VNKWLYTSPILGGDW 253
           G V+  S+  +  + + +  +  +L    + L  NG         +  +    P+   +W
Sbjct: 264 GLVVAASHYSKKARPLAESIDP-KLAVQMIALHKNGGYMANDDEIIVAYPIDIPLANAEW 322

Query: 254 FIIAVIDESIAMQS---INKMKYELIFYSAIGLVFGGLI--------LVFILRRLMSPLK 302
            +   + +S+A++S   +N+   ++       LV  GL         +  ++R +++PL+
Sbjct: 323 SLAIQVPKSMALKSSILLNEKMDDMATSLGSILVIVGLAVSILAVVTISIVIRSVIAPLR 382

Query: 303 TLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFNSFTEMLGSQIRQLKTIASGVLDGA 362
            +   ++++AS  GDLT+ ++ +   E   L  GFNSF   L   I +LK +A    + +
Sbjct: 383 LIQGRVENLASADGDLTQSIEVDSHAELIALGKGFNSFIHKLKDLISELKALAGQTQEES 442

Query: 363 EKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVAN-SAQVAADAAKEGESASLEG 421
             +A  AE++R  V +Q  E+E + TA+NEM+ TA EVA  S Q AA+      +  L  
Sbjct: 443 LSSAKIAELTRDSVHRQYGEIESVVTAVNEMSATALEVAKASEQTAAETEAMSRNVHLSE 502

Query: 422 SSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLLALNAAIEA 481
            S+  +  D +  +S     +   V ++ +++  I  +L+VI+ IA QTNLLALNAAIEA
Sbjct: 503 ESLT-KAMDYVTTMSQESMQAKVAVSKVAESSTNISRILEVISSIAAQTNLLALNAAIEA 561

Query: 482 ARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETDIVV 541
           ARAGE GRGFAVVADEVR LA +TQ ST  IS +I+ LQ+  ++ S  +D+      + V
Sbjct: 562 ARAGEQGRGFAVVADEVRALASKTQSSTDDISVLIDALQKEVQSASAIIDKGAERAQMAV 621

Query: 542 EKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLSIKLSEAAS 601
            +T Q    ++ +   I  IS     IA+AAEEQS V EE+N N   I D + +L+  A 
Sbjct: 622 SQTEQALTSLNSMVSQIEEISAQVTHIAAAAEEQSAVTEEVNRNITGISDSASELARLAG 681

Query: 602 NAGTEMNAQVSKVKEQNELLNEFK 625
            A          VK+Q++ L + K
Sbjct: 682 EAQQSSVVLAELVKQQHQQLGKLK 705