Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  221 bits (564), Expect = 5e-62
 Identities = 152/480 (31%), Positives = 238/480 (49%), Gaps = 30/480 (6%)

Query: 177 DLSRIQKNVDDINLFEAGYVFITSNTGKVIIHSNTDEL-GKNVKDIYN--GFRLDKGKVV 233
           D   + + + DI    AGY F+  + GK I H+    L G+N  D+ +  G ++  G + 
Sbjct: 75  DKGNVNQALRDIRFGSAGYFFMYDSQGKNIFHALMPNLEGQNKIDMTDPRGTKIIVGLLD 134

Query: 234 LSVNG----------------VNKWLYTSPILGGDWFI--------IAVIDESIAMQSIN 269
            +  G                + K  +   + G DW +        I  + E        
Sbjct: 135 AAKRGDGNFSYYYQKPNTNEQIEKISFVMMVPGTDWMLGTGAYIDDIEAVVEDYRQTVTE 194

Query: 270 KMKYELIFYSAIGLVFGG---LILVFILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNL 326
           +M  + +    I LV  G    +++    R++ P+K +   + DIA G GDLTK+L    
Sbjct: 195 QMAEKSLMILLIALVLTGATAFVIMVAAHRMVVPIKNMADNLNDIAKGEGDLTKRLSVKG 254

Query: 327 DKEFSELALGFNSFTEMLGSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQELEQL 386
           + E ++L   FN F + L   I  + +  + V   A    ++ +V    +     E +Q+
Sbjct: 255 EDEIAQLGRAFNLFVDKLQHIIGDVASATAKVKTAANAIHDQTKVMSSQLLSHNNETDQV 314

Query: 387 ATAMNEMAMTASEVANSAQVAADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSSVEDV 446
            TA+ EM+ TASEVA +    A+A +            V  + + I  L  +I  +   +
Sbjct: 315 VTAITEMSSTASEVAQNTTQVAEATQAATGDVANAQRCVDASLEEIAALMEQINHAAGSI 374

Query: 447 KELVKATDRIETVLDVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQ 506
           K L + + +I +VL VI  IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ
Sbjct: 375 KSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQ 434

Query: 507 QSTMQISEIIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRISDMNL 566
            ST++I+E++  L +      ++MDES+      VE +  ++E +  V  A+  I+DM+ 
Sbjct: 435 ASTLEINEMLSALHKLVSQAVKTMDESQQSCVRSVESSRAISESLGSVTSAVTAINDMST 494

Query: 567 QIASAAEEQSLVAEEINNNTVNIKDLSIKLSEAASNAGTEMNAQVSKVKEQNELLNEFKI 626
           QIA+AA EQS V EEIN N   I+++  +L  ++ +A         +      L+ +FKI
Sbjct: 495 QIATAATEQSSVTEEINRNVYAIQEIVNELLHSSEHAARVSQTVSQEGTNLGNLVGQFKI 554