Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  281 bits (720), Expect = 5e-80
 Identities = 186/640 (29%), Positives = 342/640 (53%), Gaps = 35/640 (5%)

Query: 1   MNVGFVKKLIFISSFILL-VTVAFVVWEGYTTAKKEVSVVIEDGINEIINKTERFVSLKL 59
           MN   +K+ I IS  I L + ++ + W+ Y++ K   S+++++ + ++    E+    ++
Sbjct: 1   MNSYSLKQKILISVVIALSLVISLLSWQSYSSQK---SLLLQNSLEQVQRLGEQQAE-RI 56

Query: 60  ESDISLASSIVDSISLRISDEQYINDIINGNAIKKA-----FLSTGFGFDSNGKVIENDP 114
           +  ++    IV +++ ++ D          +A+++A     F  T +G ++ G+++++DP
Sbjct: 57  QEWLAGRQDIVGALASKVEDNSL-------SALQQAQASGRFQLTYYGTET-GQMLDSDP 108

Query: 115 NWEPEDDYDPRSRGWYQEAKKNKRIFITEPYLDTEGKNFLVSISSPVADTMNNFIGAMYF 174
           + +    YDPR+R WY++A   + + +T+PY+D      +V+++   +       G +  
Sbjct: 109 SID-RTGYDPRTRPWYKQAMNERGLILTKPYVDVAYNVLVVTMAQATSQ------GVVGG 161

Query: 175 DVDLSRIQKNVDDINLFEAGYVFITSNTGKVIIHSNTDELGKNVKDIYNGFRLDKGK--- 231
           D+ ++ + ++V+ + L   GY  +    G VI + +  +  K V  I N    D  +   
Sbjct: 162 DLSIASLVESVNRMTLPANGYAIMMHKDGTVIAYKDASKAMKPVGQIDNDLNHDLPQQSR 221

Query: 232 -------VVLSVNGVNKWLYTSPILGGDWFIIAVIDESIAMQSINKMKYELIFYSAIGLV 284
                  +     G +K ++   I   DW ++ V+D+      +  +       SA+ L+
Sbjct: 222 QAGTLLPMYFENEGRDKLVWGVDIPNTDWELVIVLDKETLEAPLTDLLLTQFGLSAVVLL 281

Query: 285 FGGLILVFILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFNSFTEML 344
              L + +++  L+ PL  +  A+  IA G GDLT++++ +   E   LA  FN F    
Sbjct: 282 LSVLAISWLVNLLLGPLGRVSQALARIADGNGDLTQRIEVDTQDEVGVLADSFNRFVGSQ 341

Query: 345 GSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVANSA 404
              I  ++ +AS +   AE++     ++   +++Q QE+  +ATA+ EMA   +E+A +A
Sbjct: 342 HQLISHIRQLASELDADAERSLKTNHIAVAELQRQQQEVAMVATAVTEMASATNEIAANA 401

Query: 405 QVAADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVIN 464
           +  A AA++  ++S +G  +V++T  +I  L+  +  + + +++L +    I ++L  I 
Sbjct: 402 ENTATAAQQSAASSFQGKELVNKTRSSINSLADEVAQATDVIEDLSRHAQSISSILATIQ 461

Query: 465 DIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAK 524
            IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR L++RTQ ST ++   IE LQ    
Sbjct: 462 GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEVHATIETLQRTTA 521

Query: 525 NVSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINN 584
                M+ S++     VE  N   + +  + QA++ ISDM  QIA+AAEEQ+ V  EI  
Sbjct: 522 KAVSLMESSQMLAGNSVEDANAAAKALEEITQAVNVISDMAGQIATAAEEQTQVTGEITQ 581

Query: 585 NTVNIKDLSIKLSEAASNAGTEMNAQVSKVKEQNELLNEF 624
           NTV IKD++ +++EAA +  T+  A  ++  + N  +  F
Sbjct: 582 NTVAIKDVTDEITEAAKSDLTQAQALKARANDLNAQVATF 621