Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  227 bits (578), Expect = 2e-63
 Identities = 177/580 (30%), Positives = 287/580 (49%), Gaps = 36/580 (6%)

Query: 79  DEQYINDIINGNAIKKAFLSTGFGFDSNGKVIENDPNWEPE------DDYDPRSRGWYQE 132
           D +++N  ++ +      L   +  + +G V  N  +   E      +++  R   WY  
Sbjct: 129 DSEFLNVEVSHSVASSGSLEVYYTRNDDGTVEHNQVDDSAEKYVTTLNEFGIREAEWYLC 188

Query: 133 AKKNKRIFITEPYLD--TEGKNFLV-SISSPVADTMNNFIGAMYFDVDLSRIQKNVDDIN 189
           AK+  +  + EPYL   T G N L+ S++ PV      FIG +  DV+L   Q  +D ++
Sbjct: 189 AKETLKPCLMEPYLYEITPGNNALMTSLTVPVVKH-KQFIGVVGVDVNLPVFQALIDKLS 247

Query: 190 --LFEA-GYVFITSNTGKVIIHSNTDELGKNVKDIYNGFRLDKGKVVLSVNG-------- 238
             L++    V + S  G V+  S+  +  + + +  +  +L    V L  NG        
Sbjct: 248 KSLYDGQAKVTLLSTRGLVVAASHYSKKARPLSESIDP-KLASQIVALHKNGGYMANDDE 306

Query: 239 -VNKWLYTSPILGGDWFIIAVIDESIAMQSI----NKMKYELIFYSAIGLVFGGLILVF- 292
            +  +    P+   +W +   + ++ A +S     +KM        +I L+ G  + +  
Sbjct: 307 IIVAYPIKIPLAKAEWSLAIQVPKAQAFKSSIELNDKMDEMATSLGSILLMVGLAVSILA 366

Query: 293 ------ILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFNSFTEMLGS 346
                 ++R +++PLK +   ++ +AS  GDLT+ +  +   E   L  GFNSF   L  
Sbjct: 367 VVTISIVIRSIIAPLKMIQGRVEHLASADGDLTQSIVVDAHAELIALGKGFNSFIHKLKD 426

Query: 347 QIRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVAN-SAQ 405
            I +LKT+A    + +  +A  AE++   V +Q  E+E + TA+NEM+ TA EVA  S Q
Sbjct: 427 LISELKTLAGRTQEESLSSAQIAELTHDSVHRQYGEIESVVTAVNEMSATALEVAKASEQ 486

Query: 406 VAADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVIND 465
            AA+      +  L   S+  +  + +  +S     +   V ++ +++  I  +L+VI+ 
Sbjct: 487 TAAETEAMSRNVRLSEESLT-KAMEYVTTMSQESMQAKVAVSKVAESSTNISRILEVISS 545

Query: 466 IADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKN 525
           IA QTNLLALNAAIEAARAGE GRGFAVVADEVR LA +TQ ST  IS +I+ LQ+   +
Sbjct: 546 IAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTDDISVLIDALQQEVNS 605

Query: 526 VSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNN 585
            S  +D+      + V +T Q    ++ +   I  IS     IA+AAEEQS V EE+N N
Sbjct: 606 ASGIIDKGAERAQMAVSQTEQALTSLNSMVSQIEEISSQVTHIAAAAEEQSAVTEEVNRN 665

Query: 586 TVNIKDLSIKLSEAASNAGTEMNAQVSKVKEQNELLNEFK 625
              I D + +L+  A  A          VK+Q++ L + K
Sbjct: 666 ITGISDSASELARLAGEAQQSSVVLAELVKQQHQQLGKLK 705