Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  212 bits (540), Expect = 3e-59
 Identities = 155/448 (34%), Positives = 233/448 (52%), Gaps = 18/448 (4%)

Query: 195 YVFITSNTGKVIIHSNTDEL-----GKNVKDIYNGFRLDKGKV----VLS---VNGVNKW 242
           Y+F+   T  +I+H    EL     G N  + Y    ++ G+     VL    V G  K 
Sbjct: 88  YLFVIDETRHIIVHPVKPELVSQQMGNNGAEQYWFSMVELGRNGQQGVLQYPWVTGNGKK 147

Query: 243 LYTSPILGGDWFIIAVIDESIAMQSI-NKMKYELIFYSAIGLVFGGLILVF---ILRRLM 298
                ++ G      ++   I +Q I N + +E +      L+   L+      I R ++
Sbjct: 148 AQKMSLVMGFKPWGWILGSGILLQDIENTIWHEYVLMGGTTLILILLMAALGYIISRSIV 207

Query: 299 SPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFNSFTEMLGSQIRQLKTIASGV 358
            PL  +++A++ IA+G  +LT +L      E + LA   N     + + + +    A  V
Sbjct: 208 QPLDQVNNAMQIIATG--NLTPQLAVTGKDELAALAHNINQSMASIRTALAEANHSADNV 265

Query: 359 LDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVANSAQVAADAAKEGESAS 418
              A + A+ AE +   V  Q  +L QLATAMNEM+ T ++VAN+A+  A   KE    +
Sbjct: 266 SQAASRIASTAEETNQAVNNQRDQLAQLATAMNEMSATIADVANNAESTAKDTKEATREA 325

Query: 419 LEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLLALNAA 478
             G   VH + D I  L+  +  + + V +L +   +I  V  VI+ I+DQTNLLALNAA
Sbjct: 326 GLGDKDVHASVDGIHALAKEVEQATQQVNKLKEEIMQISEVTAVISAISDQTNLLALNAA 385

Query: 479 IEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETD 538
           IEAARAGE GRGFAVVADEVR LA RT+QST +I   I  LQ+ A + + +MD S+   +
Sbjct: 386 IEAARAGEQGRGFAVVADEVRQLASRTRQSTEEIQNTISLLQQRAVSAANAMDTSRDLAE 445

Query: 539 IVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLSIKLSE 598
             V+++ +    +SL+   I  +SDM  QIA+AAEEQS VAEE+N N   I   ++++SE
Sbjct: 446 KSVDQSTKAGNDLSLIVTHIKHVSDMATQIATAAEEQSAVAEEMNRNVCGINSSALEVSE 505

Query: 599 AASNAGTEMNAQVSKVKEQNELLNEFKI 626
           +A+    E  +        N  L  FK+
Sbjct: 506 SATYLAQESESLAELSLNLNNKLAAFKL 533